Evidence map›Paper›PMID 27658901›Full record

ArticleNeurobiology of aging2016

TYROBP genetic variants in early-onset Alzheimer's disease.

Cyril Pottier, Thomas A Ravenscroft, Patricia H Brown, NiCole A Finch, Matt Baker, Meeia Parsons, Yan W Asmann, Yingxue Ren, Elizabeth Christopher, Denise Levitch and 20 more

Open access · greenAbstract read
In one paragraph

Article in Neurobiology of aging, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 102 citations in OpenAlex.

  1. Pooled it
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  12. Homozygous mutation inBioImpacts : BI · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 8 institutions in 3 countries.

Cyril PottierDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Thomas A RavenscroftDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Patricia H BrownDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
NiCole A FinchDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Matt BakerDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Meeia ParsonsDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Yan W AsmannDivision of Biomedical Statistics and Informatics, Mayo Clinic, Jacksonville, FL, USA.
Yingxue RenDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Elizabeth ChristopherDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Denise LevitchDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Marka van BlitterswijkDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Carlos CruchagaDepartment of Psychiatry, Washington University School of Medicine, St Louis, MO, USA.
Dominique CampionInserm U1079, Rouen University, Normandy Center for Genomic Medicine and Personalized Medicine, Normandy University, Rouen, France; CNR-MAJ, Rouen University Hospital, Rouen, France; Department of Research, Rouvray Psychiatric Hospital, Rouen, France.
Gaël NicolasInserm U1079, Rouen University, Normandy Center for Genomic Medicine and Personalized Medicine, Normandy University, Rouen, France; CNR-MAJ, Rouen University Hospital, Rouen, France; Department of Genetics, Rouen University Hospital, Rouen, France.
Anne-Claire RichardInserm U1079, Rouen University, Normandy Center for Genomic Medicine and Personalized Medicine, Normandy University, Rouen, France; CNR-MAJ, Rouen University Hospital, Rouen, France.
Rita GuerreiroDepartment of Molecular Neuroscience, UCL Institute of Neurology, University College London, London, UK.
Jose T BrasDepartment of Molecular Neuroscience, UCL Institute of Neurology, University College London, London, UK.
Stephan ZuchnerDr John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami, Miller School of Medicine, Miami, FL, USA.
Michael A GonzalezThe Genesis Project Inc, Miami, FL, USA.
Guojun BuDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Steven YounkinDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
David S KnopmanDepartment of Neurology, Mayo Clinic, Rochester, MN, USA.
Keith A JosephsDepartment of Neurology, Mayo Clinic, Rochester, MN, USA.
Joseph E ParisiDepartment of Neurology, Mayo Clinic, Rochester, MN, USA.
Ronald C PetersenDepartment of Neurology, Mayo Clinic, Rochester, MN, USA.
Nilüfer Ertekin-TanerDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA; Department of Neurology, Mayo Clinic, Jacksonville, FL, USA.
Neill R Graff-RadfordDepartment of Neurology, Mayo Clinic, Jacksonville, FL, USA.
Bradley F BoeveDepartment of Neurology, Mayo Clinic, Rochester, MN, USA.
Dennis W DicksonDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Rosa RademakersDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA. Electronic address: Rademakers.rosa@mayo.edu.
Mayo Clinic in Florida · USMayo Clinic · USInserm · FRJacksonville College · USUniversity College London · GBUniversity of Miami · USWashington University in St. Louis · USWinnMed · US

Funding

THE PGRN/TDP-43 AXIS IN ALZHEIMER?S DISEASE AND NEURODEGENERATIONP50AG016574 · NIA · MAYO CLINIC ROCHESTER · PI BU, GUOJUN · 1999 to 2018
$36.9M
Integrating the exposome and methylome to inform brain molecular changes in ADRD across established diverse cohorts.U01AG046139 · NIA · UNIVERSITY OF FLORIDA · PI ERTEKIN-TANER, NILUFER, PETERS, METTE · 2013 to 2022
$24.6M
Integrative translational discovery of vascular risk factors in aging and dementiaRF1AG051504 · NIA · MAYO CLINIC JACKSONVILLE · PI BU, GUOJUN, ERTEKIN-TANER, NILUFER · 2015 to 2019
$9.8M
Identifying Rare Variants that Increase Risk for Alzheimer's DiseaseRF1AG044546 · NIA · WASHINGTON UNIVERSITY · PI CRUCHAGA, CARLOS · 2019 to 2019
$3.6M
BRAIN LIPID METABOLISM, DENDRITES AND SYNAPSES IN AGING AND ALZHEIMER'S DISEASER01AG035355 · NIA · MAYO CLINIC JACKSONVILLE · PI BU, GUOJUN · 2010 to 2019
$3.1M
IDENTIFYING RARE VARIANTS THAT INCREASE RISK FOR ALZHEIMER'S DISEASER01AG044546 · NIA · WASHINGTON UNIVERSITY · PI CRUCHAGA, CARLOS · 2013 to 2017
$2.7M
Gene discovery in PSP by transcriptome, neuropathology and sequence analysisR01NS080820 · NINDS · MAYO CLINIC JACKSONVILLE · PI ERTEKIN-TANER, NILUFER · 2013 to 2017
$1.8M
GGGGCC hexanucleotide repeat expansions in neurodegenerative diseaseR01NS080882 · NINDS · MAYO CLINIC JACKSONVILLE · PI RADEMAKERS, ROSA · 2012 to 2016
$1.6M
Genome wide association study of gene expression levels in Alzheimer's diseaseR01AG032990 · NIA · MAYO CLINIC JACKSONVILLE · PI ERTEKIN-TANER, NILUFER · 2009 to 2011
$932k
Genetic and Functional Analysis of Nested AD Risk Genes CTNNA3 and LRRTM3R21AG048101 · NIA · MAYO CLINIC JACKSONVILLE · PI ERTEKIN-TANER, NILUFER, YOUNKIN, STEVEN G · 2015 to 2016
$430k
NIA NIH HHS P50 AG016574NIA NIH HHS R01 AG032990NIA NIH HHS R01 AG035355NIA NIH HHS R21 AG048101NIA NIH HHS RF1 AG044546NIA NIH HHS RF1 AG051504NIA NIH HHS U01 AG046139NINDS NIH HHS R01 NS080820NINDS NIH HHS R01 NS080882
6 · The paper itself

Abstract

We aimed to identify new candidate genes potentially involved in early-onset Alzheimer's disease (EOAD). Exome sequencing was conducted on 45 EOAD patients with either a family history of Alzheimer's disease (AD, <65 years) or an extremely early age at the onset (≤55 years) followed by multiple variant filtering according to different modes of inheritance. We identified 29 candidate genes potentially involved in EOAD, of which the gene TYROBP, previously implicated in AD, was selected for genetic and functional follow-up. Using 3 patient cohorts, we observed rare coding TYROBP variants in 9 out of 1110 EOAD patients, whereas no such variants were detected in 1826 controls (p = 0.0001), suggesting that at least some rare TYROBP variants might contribute to EOAD risk. Overexpression of the p.D50_L51ins14 TYROBP mutant led to a profound reduction of TREM2 expression, a well-established risk factor for AD. This is the first study supporting a role for genetic variation in TYROBP in EOAD, with in vitro support for a functional effect of the p.D50_L51ins14 TYROBP mutation on TREM2 expression.

Indexed as

Genetic Association StudiesAdaptor Proteins, Signal TransducingAdultAgedAged, 80 and overAlzheimer DiseaseCohort StudiesDown-RegulationExomeFemaleGene ExpressionGenetic VariationHeLa CellsHumansMaleMembrane GlycoproteinsAdaptor Proteins, Signal TransducingMembrane GlycoproteinsMembrane ProteinsReceptors, ImmunologicTREM2 protein, humanTYROBP protein, humanAlzheimer's diseaseBurden testExome sequencingTREM2TYROBP

Identifiers

PMID27658901
PMCPMC5159294
OpenAlexW2488417892

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.