Evidence map›Paper›PMID 27653935›Full record

ArticleJournal of biomedical optics2016

Image recombination transform algorithm for superresolution structured illumination microscopy.

Xing Zhou, Ming Lei, Dan Dan, Baoli Yao, Yanlong Yang, Jia Qian, Guangde Chen, Piero R Bianco

Abstract read
In one paragraph

Article in Journal of biomedical optics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xing ZhouChinese Academy of Sciences, Xi'an Institute of Optics and Precision Mechanics, State Key Laboratory of Transient Optics and Photonics, No. 17 Xinxi Road, Xi'an, Shaanxi 710119, ChinabXi'an Jiaotong University, School of Science, No. 28 Xianning West Road, Xi'an, Shaanxi 710049, China.
Ming LeiChinese Academy of Sciences, Xi'an Institute of Optics and Precision Mechanics, State Key Laboratory of Transient Optics and Photonics, No. 17 Xinxi Road, Xi'an, Shaanxi 710119, China.
Dan DanChinese Academy of Sciences, Xi'an Institute of Optics and Precision Mechanics, State Key Laboratory of Transient Optics and Photonics, No. 17 Xinxi Road, Xi'an, Shaanxi 710119, China.
Baoli YaoChinese Academy of Sciences, Xi'an Institute of Optics and Precision Mechanics, State Key Laboratory of Transient Optics and Photonics, No. 17 Xinxi Road, Xi'an, Shaanxi 710119, China.
Yanlong YangChinese Academy of Sciences, Xi'an Institute of Optics and Precision Mechanics, State Key Laboratory of Transient Optics and Photonics, No. 17 Xinxi Road, Xi'an, Shaanxi 710119, China.
Jia QianChinese Academy of Sciences, Xi'an Institute of Optics and Precision Mechanics, State Key Laboratory of Transient Optics and Photonics, No. 17 Xinxi Road, Xi'an, Shaanxi 710119, China.
Guangde ChenXi'an Jiaotong University, School of Science, No. 28 Xianning West Road, Xi'an, Shaanxi 710049, China.
Piero R BiancoUniversity at Buffalo, Department of Microbiology and Immunology, No. 12 Capen Hall, Buffalo, New York 14214, United States.

Funding

Mechanistic studies of stalled DNA replication fork rescueR01GM100156 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI BIANCO, PIERO R, LYUBCHENKO, YURI L · 2013 to 2021
$4.0M
NIGMS NIH HHS R01 GM100156
6 · The paper itself

Abstract

Structured illumination microscopy (SIM) is an attractive choice for fast superresolution imaging. The generation of structured illumination patterns made by interference of laser beams is broadly employed to obtain high modulation depth of patterns, while the polarizations of the laser beams must be elaborately controlled to guarantee the high contrast of interference intensity, which brings a more complex configuration for the polarization control. The emerging pattern projection strategy is much more compact, but the modulation depth of patterns is deteriorated by the optical transfer function of the optical system, especially in high spatial frequency near the diffraction limit. Therefore, the traditional superresolution reconstruction algorithm for interference-based SIM will suffer from many artifacts in the case of projection-based SIM that possesses a low modulation depth. Here, we propose an alternative reconstruction algorithm based on image recombination transform, which provides an alternative solution to address this problem even in a weak modulation depth. We demonstrated the effectiveness of this algorithm in the multicolor superresolution imaging of bovine pulmonary arterial endothelial cells in our developed projection-based SIM system, which applies a computer controlled digital micromirror device for fast fringe generation and multicolor light-emitting diodes for illumination. The merit of the system incorporated with the proposed algorithm allows for a low excitation intensity fluorescence imaging even less than 1??W/cm2, which is beneficial for the long-term, in vivo superresolved imaging of live cells and tissues.

Indexed as

AlgorithmsAnimalsCattleComputer SimulationEndothelial CellsEquipment DesignHistocytochemistryImage Processing, Computer-AssistedMicroscopy, FluorescencePulmonary Artery

Identifiers

PMID27653935
PMCPMC5842319

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.