Evidence map›Paper›PMID 27653816›Full record

ArticleGenes and immunity2016

Natural genetic variation profoundly regulates gene expression in immune cells and dictates susceptibility to CNS autoimmunity.

F Bearoff, R Del Rio, L K Case, J A Dragon, T Nguyen-Vu, C-Y Lin, E P Blankenhorn, C Teuscher, D N Krementsov

Open access · bronzeAbstract read
In one paragraph

Article in Genes and immunity, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Apigenin Modulates Dendritic Cell Activities and Curbs Inflammation Via RelB Inhibition in the Context of Neuroinflammatory Diseases.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2021
    Article
  9. Observational
  10. Interactions between host genetics and gut microbiota determine susceptibility to CNS autoimmunity.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  11. Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

F BearoffDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
R Del RioDepartment of Medicine, University of Vermont, Burlington, VT, USA.
L K CaseThe Jackson Laboratory, Bar Harbor, ME, USA.
J A DragonDepartment of Microbiology and Molecular Genetics, University of Vermont, Burlington, VT, USA.
T Nguyen-VuCenter for Nuclear Receptors and Cell Signaling, Department of Biology and Biochemistry, University of Houston, Houston, TX, USA.
C-Y LinCenter for Nuclear Receptors and Cell Signaling, Department of Biology and Biochemistry, University of Houston, Houston, TX, USA.
E P BlankenhornDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
C TeuscherDepartment of Medicine, University of Vermont, Burlington, VT, USA.
D N KrementsovDepartment of Medicine, University of Vermont, Burlington, VT, USA.
University of Vermont · USDrexel University · USUniversity of Houston · USJackson Laboratory · US

Funding

Vermont Immunobioloigy/ Infectious Diseases CenterP20GM103496 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C · 2012 to 2015
$8.7M
Vermont Immunology/Infectious Diseases CenterP30GM118228 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C · 2016 to 2021
$6.8M
Susceptibilty and Resistance Loci in Mouse EAER01NS036526 · NINDS · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI TEUSCHER, CORY · 1996 to 2008
$4.4M
H1R Signaling and Immune Deviation in EAER01NS069628 · NINDS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI TEUSCHER, CORY · 2010 to 2014
$1.6M
Gene-Environment Interactions in CNS Autoimmune DiseaseR21NS095007 · NINDS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI TEUSCHER, CORY · 2016 to 2017
$427k
p38 MAPK as a female-specific druggable target in CNS autoimmune diseaseR21NS076200 · NINDS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI TEUSCHER, CORY · 2011 to 2012
$419k
NIGMS NIH HHS P20 GM103496NIGMS NIH HHS P30 GM118228NINDS NIH HHS R01 NS036526NINDS NIH HHS R01 NS069628NINDS NIH HHS R21 NS076200NINDS NIH HHS R21 NS095007
6 · The paper itself

Abstract

Regulation of gene expression in immune cells is known to be under genetic control, and likely contributes to susceptibility to autoimmune diseases such as multiple sclerosis (MS). How this occurs in concert across multiple immune cell types is poorly understood. Using a mouse model that harnesses the genetic diversity of wild-derived mice, more accurately reflecting genetically diverse human populations, we provide an extensive characterization of the genetic regulation of gene expression in five different naive immune cell types relevant to MS. The immune cell transcriptome is shown to be under profound genetic control, exhibiting diverse patterns: global, cell-specific and sex-specific. Bioinformatic analysis of the genetically controlled transcript networks reveals reduced cell type specificity and inflammatory activity in wild-derived PWD/PhJ mice, compared with the conventional laboratory strain C57BL/6J. Additionally, candidate MS-GWAS (genome-wide association study candidate genes for MS susceptibility) genes were significantly enriched among transcripts overrepresented in C57BL/6J cells compared with PWD. These expression level differences correlate with robust differences in susceptibility to experimental autoimmune encephalomyelitis, the principal model of MS, and skewing of the encephalitogenic T-cell responses. Taken together, our results provide functional insights into the genetic regulation of the immune transcriptome, and shed light on how this in turn contributes to susceptibility to autoimmune disease.

Indexed as

Gene Expression RegulationGenetic VariationAnimalsAutoimmunityDisease SusceptibilityEncephalomyelitis, Autoimmune, ExperimentalFemaleGenome-Wide Association StudyMaleMiceMice, Inbred C57BLMultiple SclerosisSex FactorsTranscriptome

Identifiers

PMID27653816
PMCPMC5133152
OpenAlexW2522695184

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.