Evidence map›Paper›PMID 27653485›Full record

ArticleBiophysical journal2016

Membrane Binding and Oligomerization of the Lipopeptide A54145 Studied by Pyrene Fluorescence.

TianHua Zhang, Scott D Taylor, Michael Palmer, Jean Duhamel

Abstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Controllable fluorescenceRSC advances · 2019
    Article
  9. Review
  10. Article
  11. Article
  12. Daptomycin-Phosphatidylglycerol Domains in Lipid Membranes.Langmuir : the ACS journal of surfaces and colloids · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

TianHua ZhangDepartment of Chemistry, University of Waterloo, Waterloo, Ontario, Canada.
Scott D TaylorDepartment of Chemistry, University of Waterloo, Waterloo, Ontario, Canada.
Michael PalmerDepartment of Chemistry, University of Waterloo, Waterloo, Ontario, Canada. Electronic address: mpalmer@uwaterloo.ca.
Jean DuhamelDepartment of Chemistry, University of Waterloo, Waterloo, Ontario, Canada. Electronic address: jduhamel@uwaterloo.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A54145 is a lipopeptide antibiotic related to daptomycin that permeabilizes bacterial cell membranes. Its action requires both calcium and phosphatidylglycerol in the target membrane, and it is accompanied by the formation of membrane-associated oligomers. We here probed the interaction of A54145 with model membranes composed of dimyristoylphosphatidylcholine and dimyristoylphosphatidylglycerol, using the steady-state and time-resolved fluorescence of a pyrene-labeled derivative (Py-A54145). In solution, the labeled peptide was found to exist as a monomer. Its membrane interaction occurred in two stages that could be clearly distinguished by varying the calcium concentration. In the first stage, which was observed between 0.15 and 1 mM calcium, Py-A54145 bound to the membrane, as indicated by a strong increase in pyrene monomer emission. At the same calcium concentration, excimer emission increased also, suggesting that Py-A54145 had oligomerized. A global analysis of the time-resolved pyrene monomer and excimer fluorescence confirmed that Py-A54145 forms oligomers quantitatively and concomitantly with membrane binding. When calcium was raised beyond 1 mM, a distinct second transition was observed that may correspond to a doubling of the number of oligomer subunits. The collective findings confirm and extend our understanding of the action mode of A54145 and daptomycin.

Indexed as

Anti-Bacterial AgentsBacillus subtilisCalciumCations, DivalentDaptomycinDimerizationDimyristoylphosphatidylcholineFluorescent DyesLipoproteinsLiposomesModels, TheoreticalMolecular StructurePhosphatidylglycerolsPyrenesSolutionsSpectrum AnalysisA54145Anti-Bacterial AgentsCalciumCations, DivalentDaptomycinDimyristoylphosphatidylcholinedimyristoylphosphatidylglycerolFluorescent DyesLipoproteinsLiposomesPhosphatidylglycerolspyrenePyrenesSolutionsWater

Identifiers

PMID27653485
PMCPMC5034303

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.