Evidence map›Paper›PMID 27653474›Full record

ArticleBiophysical journal2016

Domain Organization in the 54-kDa Subunit of the Chloroplast Signal Recognition Particle.

Rory C Henderson, Feng Gao, Srinivas Jayanthi, Alicia Kight, Priyanka Sharma, Robyn L Goforth, Colin D Heyes, Ralph L Henry, Thallapuranam Krishnaswamy Suresh Kumar

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Rory C HendersonDepartment of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas.
Feng GaoDepartment of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas.
Srinivas JayanthiDepartment of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas.
Alicia KightDepartment of Biological Sciences, University of Arkansas, Fayetteville, Arkansas.
Priyanka SharmaDepartment of Biological Sciences, University of Arkansas, Fayetteville, Arkansas.
Robyn L GoforthDepartment of Biological Sciences, University of Arkansas, Fayetteville, Arkansas.
Colin D HeyesDepartment of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas.
Ralph L HenryDepartment of Biological Sciences, University of Arkansas, Fayetteville, Arkansas.
Thallapuranam Krishnaswamy Suresh KumarDepartment of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas. Electronic address: sthalla@uark.edu.
University of Arkansas at Fayetteville · US

Funding

Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5M
Center for Protein Structure and FunctionP30GM103450 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI MILLETT, FRANCIS S · 2012 to 2014
$3.2M
Biopolymer-based strategies for local delivery of cytokine therapeuticsR01CA172631 · NCI · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI ZAHAROFF, DAVID · 2014 to 2018
$1.5M
NCI NIH HHS R01 CA172631NIGMS NIH HHS P30 GM103450NIGMS NIH HHS P41 GM103485
6 · The paper itself

Abstract

Chloroplast signal recognition particle (cpSRP) is a heterodimer composed of an evolutionarily conserved 54-kDa GTPase (cpSRP54) and a unique 43-kDa subunit (cpSRP43) responsible for delivering light-harvesting chlorophyll binding protein to the thylakoid membrane. While a nearly complete three-dimensional structure of cpSRP43 has been determined, no high-resolution structure is yet available for cpSRP54. In this study, we developed and examined an in silico three-dimensional model of the structure of cpSRP54 by homology modeling using cytosolic homologs. Model selection was guided by single-molecule Förster resonance energy transfer experiments, which revealed the presence of at least two distinct conformations. Small angle x-ray scattering showed that the linking region among the GTPase (G-domain) and methionine-rich (M-domain) domains, an M-domain loop, and the cpSRP43 binding C-terminal extension of cpSRP54 are predominantly disordered. Interestingly, the linker and loop segments were observed to play an important role in organizing the domain arrangement of cpSRP54. Further, deletion of the finger loop abolished loading of the cpSRP cargo, light-harvesting chlorophyll binding protein. These data highlight important structural dynamics relevant to cpSRP54's role in the post- and cotranslational signaling processes.

Indexed as

AnimalsArabidopsisArabidopsis ProteinsArchaeal ProteinsBacterial ProteinsChloroplastsDogsEscherichia coliFluorescence Resonance Energy TransferGTP PhosphohydrolasesMethanocaldococcusMolecular Dynamics SimulationMutationProtein DomainsScattering, Small AngleSignal Recognition ParticleArabidopsis ProteinsArchaeal ProteinsBacterial ProteinsGTP PhosphohydrolasesSignal Recognition Particle

Identifiers

PMID27653474
PMCPMC5034345
OpenAlexW2523353015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.