Evidence map›Paper›PMID 27651847›Full record

ArticleThe open microbiology journal2016

The Diversity of Sulfide Oxidation and Sulfate Reduction Genes Expressed by the Bacterial Communities of the Cariaco Basin, Venezuela.

Maria J Rodriguez-Mora, Virginia P Edgcomb, Craig Taylor, Mary I Scranton, Gordon T Taylor, Andrei Y Chistoserdov

Open access · diamondAbstract read
In one paragraph

Article in The open microbiology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Maria J Rodriguez-MoraDepartment of Biology, University of Louisiana at Lafayette, Lafayette, Louisiana, 70504, USA.
Virginia P EdgcombGeology and Geophysics Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, 02543, USA.
Craig TaylorBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, 02543, USA.
Mary I ScrantonSchool of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, New York, 11794, USA.
Gordon T TaylorSchool of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, New York, 11794, USA.
Andrei Y ChistoserdovDepartment of Biology, University of Louisiana at Lafayette, Lafayette, Louisiana, 70504, USA.
Stony Brook University · USUniversity of Louisiana at Lafayette · USWoods Hole Oceanographic Institution · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Qualitative expression of dissimilative sulfite reductase (dsrA), a key gene in sulfate reduction, and sulfide:quinone oxidoreductase (sqr), a key gene in sulfide oxidation was investigated. Neither of the two could be amplified from mRNA retrieved with Niskin bottles but were amplified from mRNA retrieved by the Deep SID. The sqr and sqr-like genes retrieved from the Cariaco Basin were related to the sqr genes from a Bradyrhizobium sp., Methylomicrobium alcaliphilum, Sulfurovum sp. NBC37-1, Sulfurimonas autotrophica, Thiorhodospira sibirica and Chlorobium tepidum. The dsrA gene sequences obtained from the redoxcline of the Cariaco Basin belonged to chemoorganotrophic and chemoautotrophic sulfate and sulfur reducers belonging to the class Deltaproteobacteria (phylum Proteobacteria) and the order Clostridiales (phylum Firmicutes).

Indexed as

Cariaco BasincDNAGene expressionSulfide:quinone oxidoreductaseSulfite reductaseSulfur cycle

Identifiers

PMID27651847
PMCPMC5012083
OpenAlexW2509825694

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.