Evidence map›Paper›PMID 27651491›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Dioxygenase-encoding AtDAO1 gene controls IAA oxidation and homeostasis in Arabidopsis.

Silvana Porco, Aleš Pěnčík, Afaf Rashed, Ute Voß, Rubén Casanova-Sáez, Anthony Bishopp, Agata Golebiowska, Rahul Bhosale, Ranjan Swarup, Kamal Swarup and 8 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 208 citations in OpenAlex.

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49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 5 countries.

Silvana PorcoCentre for Plant Integrative Biology, Plant and Crop Science Division, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom;
Aleš PěnčíkUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umea, Sweden; Laboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany Academy of Sciences of the Czech Republic (AS CR), CZ-78371 Olomouc, Czech Republic; Faculty of Science, Palacký University, CZ-78371 Olomouc, Czech Republic;
Afaf RashedCentre for Plant Integrative Biology, Plant and Crop Science Division, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom;
Ute VoßCentre for Plant Integrative Biology, Plant and Crop Science Division, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom;
Rubén Casanova-SáezUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umea, Sweden;
Anthony BishoppCentre for Plant Integrative Biology, Plant and Crop Science Division, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom;
Agata GolebiowskaCentre for Plant Integrative Biology, Plant and Crop Science Division, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom; Integrated Molecular Plant Physiology Research, Biology Department, Antwerp University, 2020 Antwerp, Belgium;
Rahul BhosaleCentre for Plant Integrative Biology, Plant and Crop Science Division, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom;ORCID 0000-0001-6515-4922
Ranjan SwarupCentre for Plant Integrative Biology, Plant and Crop Science Division, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom;
Kamal SwarupCentre for Plant Integrative Biology, Plant and Crop Science Division, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom;
Pavlína PeňákováLaboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany Academy of Sciences of the Czech Republic (AS CR), CZ-78371 Olomouc, Czech Republic; Faculty of Science, Palacký University, CZ-78371 Olomouc, Czech Republic;
Ondřej NovákUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umea, Sweden; Laboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany Academy of Sciences of the Czech Republic (AS CR), CZ-78371 Olomouc, Czech Republic; Faculty of Science, Palacký University, CZ-78371 Olomouc, Czech Republic;
Paul StaswickDepartment of Agronomy and Horticulture, University of Nebraska, Lincoln, NE 68583-0915;
Peter HeddenDepartment of Plant Biology and Crop Science, Rothamsted Research, Hertfordshire AL5 2JQ, United Kingdom.
Andrew L PhillipsDepartment of Plant Biology and Crop Science, Rothamsted Research, Hertfordshire AL5 2JQ, United Kingdom.
Kris VissenbergIntegrated Molecular Plant Physiology Research, Biology Department, Antwerp University, 2020 Antwerp, Belgium;
Malcolm J BennettCentre for Plant Integrative Biology, Plant and Crop Science Division, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom; malcolm.bennett@nottingham.ac.uk karin.ljung@slu.se.ORCID 0000-0003-0475-390X
Karin LjungUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umea, Sweden; malcolm.bennett@nottingham.ac.uk karin.ljung@slu.se.ORCID 0000-0003-2901-189X
University of Nottingham · GBSwedish University of Agricultural Sciences · SERothamsted Research · GBCzech Academy of Sciences, Institute of Experimental Botany · CZUniversity of Antwerp · BEUniversity of Nebraska–Lincoln · US

Funding

Biotechnology and Biological Sciences Research Council BB/E025161/1Biotechnology and Biological Sciences Research Council BB/H020314/1Biotechnology and Biological Sciences Research Council BBS/E/C/00004951European Research Council
6 · The paper itself

Abstract

Auxin represents a key signal in plants, regulating almost every aspect of their growth and development. Major breakthroughs have been made dissecting the molecular basis of auxin transport, perception, and response. In contrast, how plants control the metabolism and homeostasis of the major form of auxin in plants, indole-3-acetic acid (IAA), remains unclear. In this paper, we initially describe the function of the Arabidopsis thaliana gene DIOXYGENASE FOR AUXIN OXIDATION 1 (AtDAO1). Transcriptional and translational reporter lines revealed that AtDAO1 encodes a highly root-expressed, cytoplasmically localized IAA oxidase. Stable isotope-labeled IAA feeding studies of loss and gain of function AtDAO1 lines showed that this oxidase represents the major regulator of auxin degradation to 2-oxoindole-3-acetic acid (oxIAA) in Arabidopsis Surprisingly, AtDAO1 loss and gain of function lines exhibited relatively subtle auxin-related phenotypes, such as altered root hair length. Metabolite profiling of mutant lines revealed that disrupting AtDAO1 regulation resulted in major changes in steady-state levels of oxIAA and IAA conjugates but not IAA. Hence, IAA conjugation and catabolism seem to regulate auxin levels in Arabidopsis in a highly redundant manner. We observed that transcripts of AtDOA1 IAA oxidase and GH3 IAA-conjugating enzymes are auxin-inducible, providing a molecular basis for their observed functional redundancy. We conclude that the AtDAO1 gene plays a key role regulating auxin homeostasis in Arabidopsis, acting in concert with GH3 genes, to maintain auxin concentration at optimal levels for plant growth and development.

Indexed as

Genes, PlantHomeostasisAmino Acid SequenceArabidopsisArabidopsis ProteinsDioxygenasesGene Expression Regulation, PlantGreen Fluorescent ProteinsIndoleacetic AcidsMetabolomicsModels, BiologicalMutationOxidation-ReductionPhenotypePhylogenyPlant RootsArabidopsis ProteinsDioxygenasesGreen Fluorescent Proteinsindoleacetic acidIndoleacetic AcidsRNA, MessengerArabidopsis thalianadioxygenaseIAA degradationoxidaseroot hair elongation

Identifiers

PMID27651491
PMCPMC5047156
OpenAlexW2522670482

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.