Evidence map›Paper›PMID 27650576›Full record

ArticleScientific reports2016

G-quadruplex aptamer targeting Protein A and its capability to detect Staphylococcus aureus demonstrated by ELONA.

Regina Stoltenburg, Petra Krafčiková, Viktor Víglaský, Beate Strehlitz

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Aptamer Based SPREETA Sensor for the Detection ofJournal of microbiology and biotechnology · 2024
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Aptamers isolated against mosquito-borne pathogens.World journal of microbiology & biotechnology · 2021
    Review
  12. Review
  13. Review
  14. Review
  15. Novel Detection of Nasty Bugs, Prevention Is Better than Cure.International journal of molecular sciences · 2020
    Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Regina StoltenburgUFZ - Helmholtz Centre for Environmental Research, Department of Soil Ecology, Theodor-Lieser-Straße 4, 06120 Halle, Germany.
Petra KrafčikováP.J.Šafárik University, Faculty of Sciences, Institute of Chemistry, Dept. of Biochemistry, Moyzesova 11, 04011 Košice, Slovakia.
Viktor VíglaskýP.J.Šafárik University, Faculty of Sciences, Institute of Chemistry, Dept. of Biochemistry, Moyzesova 11, 04011 Košice, Slovakia.
Beate StrehlitzUFZ - Helmholtz Centre for Environmental Research, Department Environmental and Biotechnology Centre, Permoserstraße 15, 04318 Leipzig, Germany.
Helmholtz Centre for Environmental Research · DEInstitute of Chemistry of the Slovak Academy of Sciences · SK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aptamers for whole cell detection are selected mostly by the Cell-SELEX procedure. Alternatively, the use of specific cell surface epitopes as target during aptamer selections allows the development of aptamers with ability to bind whole cells. In this study, we integrated a formerly selected Protein A-binding aptamer PA#2/8 in an assay format called ELONA (Enzyme-Linked OligoNucleotide Assay) and evaluated the ability of the aptamer to recognise and bind to Staphylococcus aureus presenting Protein A on the cell surface. The full-length aptamer and one of its truncated variants could be demonstrated to specifically bind to Protein A-expressing intact cells of S. aureus, and thus have the potential to expand the portfolio of aptamers that can act as an analytical agent for the specific recognition and rapid detection of the bacterial pathogen. The functionality of the aptamer was found to be based on a very complex, but also highly variable structure. Two structural key elements were identified. The aptamer sequence contains several G-clusters allowing folding into a G-quadruplex structure with the potential of dimeric and multimeric assembly. An inverted repeat able to form an imperfect stem-loop at the 5'-end also contributes essentially to the aptameric function.

Indexed as

G-QuadruplexesStaphylococcus aureusAptamers, NucleotideStaphylococcal Protein AAptamers, NucleotideStaphylococcal Protein A

Identifiers

PMID27650576
PMCPMC5030626
OpenAlexW2523416217

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.