Evidence map›Paper›PMID 27649496›Full record

ArticlePloS one2016

Automated Segmentation of Nuclei in Breast Cancer Histopathology Images.

Maqlin Paramanandam, Michael O'Byrne, Bidisha Ghosh, Joy John Mammen, Marie Therese Manipadam, Robinson Thamburaj, Vikram Pakrashi

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Singular Nuclei Segmentation for AutomaticSensors (Basel, Switzerland) · 2022
    Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
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  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Maqlin ParamanandamDepartment of Mathematics, Madras Christian College, Chennai, India.
Michael O'ByrneSchool of Mechanical and Materials Engineering, University College Dublin, Ireland.
Bidisha GhoshDepartment of Civil, Structural and Environmental Engineering, Trinity College Dublin, Ireland.
Joy John MammenDepartment of Transfusion Medicine & Immunohematology, Christian Medical College, Vellore, India.
Marie Therese ManipadamDepartment of Pathology, Christian Medical College, Vellore, India.
Robinson ThamburajDepartment of Mathematics, Madras Christian College, Chennai, India.
Vikram PakrashiSchool of Mechanical and Materials Engineering, University College Dublin, Ireland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The process of Nuclei detection in high-grade breast cancer images is quite challenging in the case of image processing techniques due to certain heterogeneous characteristics of cancer nuclei such as enlarged and irregularly shaped nuclei, highly coarse chromatin marginalized to the nuclei periphery and visible nucleoli. Recent reviews state that existing techniques show appreciable segmentation accuracy on breast histopathology images whose nuclei are dispersed and regular in texture and shape; however, typical cancer nuclei are often clustered and have irregular texture and shape properties. This paper proposes a novel segmentation algorithm for detecting individual nuclei from Hematoxylin and Eosin (H&E) stained breast histopathology images. This detection framework estimates a nuclei saliency map using tensor voting followed by boundary extraction of the nuclei on the saliency map using a Loopy Back Propagation (LBP) algorithm on a Markov Random Field (MRF). The method was tested on both whole-slide images and frames of breast cancer histopathology images. Experimental results demonstrate high segmentation performance with efficient precision, recall and dice-coefficient rates, upon testing high-grade breast cancer images containing several thousand nuclei. In addition to the optimal performance on the highly complex images presented in this paper, this method also gave appreciable results in comparison with two recently published methods-Wienert et al. (2012) and Veta et al. (2013), which were tested using their own datasets.

Indexed as

AlgorithmsBreastBreast NeoplasmsCell NucleusFemaleHumansImage Interpretation, Computer-AssistedImage Processing, Computer-AssistedPattern Recognition, AutomatedStaining and Labeling

Identifiers

PMID27649496
PMCPMC5029866

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.