Evidence map›Paper›PMID 27649155›Full record

ArticleInternational journal of molecular sciences2016

Analysis of Small RNAs in Streptococcus mutans under Acid Stress-A New Insight for Caries Research.

Shanshan Liu, Ye Tao, Lixia Yu, Peilin Zhuang, Qinghui Zhi, Yan Zhou, Huancai Lin

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Overexpression of ASFrontiers in cellular and infection microbiology · 2026
    Article
  2. Article
  3. Role ofMicroorganisms · 2025
    Article
  4. Article
  5. [Research Updates: Cariogenic Mechanism ofSichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2022
    Review
  6. Arginine-induced metabolomic perturbation inJournal of oral microbiology · 2022
    Article
  7. [Regulatory role of small RNANan fang yi ke da xue xue bao = Journal of Southern Medical University · 2021
    Article
  8. Review
  9. Review
  10. Insight into the Effect of Small RNAIndian journal of microbiology · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Shanshan LiuDepartment of Preventive Dentistry, Guanghua School of Stomatology, Sun Yat-Sen University, 56 Ling Yuan Road West, Guangzhou 510055, China. liushanshancan@163.com.
Ye TaoDepartment of Preventive Dentistry, Guanghua School of Stomatology, Sun Yat-Sen University, 56 Ling Yuan Road West, Guangzhou 510055, China. taoye18@aliyun.com.
Lixia YuDepartment of Preventive Dentistry, Guanghua School of Stomatology, Sun Yat-Sen University, 56 Ling Yuan Road West, Guangzhou 510055, China. yuu_lx@163.com.
Peilin ZhuangDepartment of Preventive Dentistry, Guanghua School of Stomatology, Sun Yat-Sen University, 56 Ling Yuan Road West, Guangzhou 510055, China. pelion@163.com.
Qinghui ZhiDepartment of Preventive Dentistry, Guanghua School of Stomatology, Sun Yat-Sen University, 56 Ling Yuan Road West, Guangzhou 510055, China. zhiqinghui@hotmail.com.
Yan ZhouDepartment of Preventive Dentistry, Guanghua School of Stomatology, Sun Yat-Sen University, 56 Ling Yuan Road West, Guangzhou 510055, China. zhouy10.3@163.com.
Huancai LinDepartment of Preventive Dentistry, Guanghua School of Stomatology, Sun Yat-Sen University, 56 Ling Yuan Road West, Guangzhou 510055, China. lin_hc@163.net.
Sun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Streptococcus mutans (S. mutans) is the major clinical pathogen responsible for dental caries. Its acid tolerance has been identified as a significant virulence factor for its survival and cariogenicity in acidic conditions. Small RNAs (sRNAs) are recognized as key regulators of virulence and stress adaptation. Here, we constructed three libraries of sRNAs with small size exposed to acidic conditions for the first time, followed by verification using qRT-PCR. The levels of two sRNAs and target genes predicted to be bioinformatically related to acid tolerance were further evaluated under different acid stress conditions (pH 7.5, 6.5, 5.5, and 4.5) at three time points (0.5, 1, and 2 h). Meanwhile, bacterial growth characteristics and vitality were assessed. We obtained 1879 sRNAs with read counts of at least 100. One hundred and ten sRNAs were perfectly mapped to reported msRNAs in S. mutans. Ten out of 18 sRNAs were validated by qRT-PCR. The survival of bacteria declined as the acid was increased from pH 7.5 to 4.5 at each time point. The bacteria can proliferate under each pH except pH 4.5 with time. The levels of sRNAs gradually decreased from pH 7.5 to 5.5, and slightly increased in pH 4.5; however, the expression levels of target mRNAs were up-regulated in acidic conditions than in pH 7.5. These results indicate that some sRNAs are specially induced at acid stress conditions, involving acid adaptation, and provide a new insight into exploring the complex acid tolerance for S. mutans.

Indexed as

AcidsBacterial ProteinsDental CariesDental ResearchGene LibraryHumansHydrogen-Ion ConcentrationReverse Transcriptase Polymerase Chain ReactionRNA, BacterialRNA, MessengerRNA, Small UntranslatedSequence Analysis, DNAStreptococcus mutansVirulenceAcidsBacterial ProteinsRNA, BacterialRNA, MessengerRNA, Small Untranslateddental cariesgene expressionsRNAsStreptococcus mutansvirulence

Identifiers

PMID27649155
PMCPMC5037804
OpenAlexW2520496301

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.