Evidence map›Paper›PMID 27645563›Full record

ArticleBMC genomics2016

Comparative genomic analysis between newly sequenced Brucella suis Vaccine Strain S2 and the Virulent Brucella suis Strain 1330.

Dong-Dong Di, Hai Jiang, Li-Li Tian, Jing-Li Kang, Wen Zhang, Xin-Ping Yi, Feng Ye, Qi Zhong, Bo Ni, You-Yu He and 5 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  4. Safety and Transcriptome Analysis of Live AttenuatedFrontiers in veterinary science · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Dong-Dong DiLaboratory of Zoonoses, China Animal Health and Epidemiology Center, Qingdao, Shandong, China.
Hai JiangState Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, National Institute for Communicable Disease Control and Prevention, Beijing, China.
Li-Li TianLaboratory of Zoonoses, China Animal Health and Epidemiology Center, Qingdao, Shandong, China.
Jing-Li KangLaboratory of Zoonoses, China Animal Health and Epidemiology Center, Qingdao, Shandong, China.
Wen ZhangState Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, National Institute for Communicable Disease Control and Prevention, Beijing, China.
Xin-Ping YiXinjiang Academy of Animal Science, Institute of Veterinary Research, Urumuqi, Xinjiang, China.
Feng YeXinjiang Academy of Animal Science, Institute of Veterinary Research, Urumuqi, Xinjiang, China.
Qi ZhongXinjiang Academy of Animal Science, Institute of Veterinary Research, Urumuqi, Xinjiang, China.
Bo NiLaboratory of Zoonoses, China Animal Health and Epidemiology Center, Qingdao, Shandong, China.
You-Yu HeZhongXin Biotechology Shanghai Co, Ltd. 12F, Building 1, 100 Qinzhou Road, Shanghai, China.
Lin XiaZhongXin Biotechology Shanghai Co, Ltd. 12F, Building 1, 100 Qinzhou Road, Shanghai, China.
Yao YuZhongXin Biotechology Shanghai Co, Ltd. 12F, Building 1, 100 Qinzhou Road, Shanghai, China.
Bu-Yun CuiState Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, National Institute for Communicable Disease Control and Prevention, Beijing, China. cuibuyun@icdc.cn.
Xiang MaoChinese Academy of Agricultural Sciences, Shanghai Veterinary Research Institute, Shanghai, China. xmao@shvri.ac.cn.
Wei-Xing FanLaboratory of Zoonoses, China Animal Health and Epidemiology Center, Qingdao, Shandong, China. fwxsjl@126.com.
China Animal Health and Epidemiology Center · CNNational Institute for Communicable Disease Control and Prevention · CNXinjiang Academy of Animal Science · CNChinese Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBrucellosis is a bacterial disease caused by Brucella infection. In the late fifties, Brucella suis vaccine strain S2 with reduced virulence was obtained by serial transfer of a virulent B. suis biovar 1 strain in China. It has been widely used for vaccination in China since 1971. Until now, the mechanisms underlie virulence attenuation of S2 are still unknown.

resultsIn this paper, the whole genome sequencing of S2 was carried out by Illumina Hiseq2000 sequencing method. We further performed the comparative genomic analysis to find out the differences between S2 and the virulent Brucella suis strain 1330. We found premature stops in outer membrane autotransporter omaA and eryD genes. Single mutations were found in phosphatidylcholine synthase, phosphorglucosamine mutase, pyruvate kinase and FliF, which have been reported to be related to the virulence of Brucella or other bacteria. Of the other different proteins between S2 and 1330, such as Omp2b, periplasmic sugar-binding protein, and oligopeptide ABC transporter, no definitive implications related to bacterial virulence were found, which await further investigation.

conclusionsThe data presented here provided the rational basis for designing Brucella vaccines that could be used in other strains.

Indexed as

Genome, BacterialGenomicsBrucella suisBrucella VaccineChromosomes, BacterialComparative Genomic HybridizationComputational BiologyGene OrderGenes, BacterialHigh-Throughput Nucleotide SequencingPolymorphism, Single NucleotideVirulenceBrucella VaccineBrucella suis vaccine strain S2Brucella suis virulent strain 1330Comparative genomic analysisGenome sequence

Identifiers

PMID27645563
PMCPMC5029015
OpenAlexW2522812220

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.