Evidence map›Paper›PMID 27645106›Full record

ArticleScientific reports2016

Retinal transcriptome sequencing sheds light on the adaptation to nocturnal and diurnal lifestyles in raptors.

Yonghua Wu, Elizabeth A Hadly, Wenjia Teng, Yuyang Hao, Wei Liang, Yu Liu, Haitao Wang

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
9.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 83 citations in OpenAlex.

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  10. Wild hummingbirds discriminate nonspectral colors.Proceedings of the National Academy of Sciences of the United States of America · 2020
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  11. New genome assembly of the barn owl (Ecology and evolution · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Yonghua WuJilin Provincial Engineering Laboratory of Avian Ecology and Conservation Genetics, Northeast Normal University, 5268 Renmin Street, Changchun, 130024, China.
Elizabeth A HadlyDepartment of Biology, Stanford University, 371 Serra Mall, Stanford, CA 94305-5020, USA.
Wenjia TengBiomarker Technologies Corporation, Beijing 101300, China.
Yuyang HaoJilin Provincial Key Laboratory of Animal Resource Conservation and Utilization, Northeast Normal University, 2555 Jingyue Street, Changchun 130117, China.
Wei LiangMinistry of Education Key Laboratory for Tropical Animal and Plant Ecology, College of Life Sciences, Hainan Normal University, Haikou 571158, China.
Yu LiuJilin Provincial Engineering Laboratory of Avian Ecology and Conservation Genetics, Northeast Normal University, 5268 Renmin Street, Changchun, 130024, China.
Haitao WangJilin Provincial Engineering Laboratory of Avian Ecology and Conservation Genetics, Northeast Normal University, 5268 Renmin Street, Changchun, 130024, China.
Northeast Normal University · CNBiomarker Technologies (China) · CNHainan Normal University · CNStanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Owls (Strigiformes) represent a fascinating group of birds that are the ecological night-time counterparts to diurnal raptors (Accipitriformes). The nocturnality of owls, unusual within birds, has favored an exceptional visual system that is highly tuned for hunting at night, yet the molecular basis for this adaptation is lacking. Here, using a comparative evolutionary analysis of 120 vision genes obtained by retinal transcriptome sequencing, we found strong positive selection for low-light vision genes in owls, which contributes to their remarkable nocturnal vision. Not surprisingly, we detected gene loss of the violet/ultraviolet-sensitive opsin (SWS1) in all owls we studied, but two other color vision genes, the red-sensitive LWS and the blue-sensitive SWS2, were found to be under strong positive selection, which may be linked to the spectral tunings of these genes toward maximizing photon absorption in crepuscular conditions. We also detected the only other positively selected genes associated with motion detection in falcons and positively selected genes associated with bright-light vision and eye protection in other diurnal raptors (Accipitriformes). Our results suggest the adaptive evolution of vision genes reflect differentiated activity time and distinct hunting behaviors.

Identifiers

PMID27645106
PMCPMC5028738
OpenAlexW2522168367

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.