Evidence map›Paper›PMID 27642770›Full record

ArticleACS infectious diseases2016

A Target-Based Whole Cell Screen Approach To Identify Potential Inhibitors of Mycobacterium tuberculosis Signal Peptidase.

Shilah A Bonnett, Juliane Ollinger, Susantha Chandrasekera, Stephanie Florio, Theresa O'Malley, Megan Files, Jo-Ann Jee, James Ahn, Allen Casey, Yulia Ovechkina and 3 more

Open access · hybridAbstract read
In one paragraph

Article in ACS infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 32 citations in OpenAlex.

  1. Thienopyrimidine amide analogs target MmpL3 inAntimicrobial agents and chemotherapy · 2025
    Article
  2. Novel 3-Aminothieno[2,3-ACS medicinal chemistry letters · 2025
    Article
  3. Review
  4. Article
  5. Article
  6. "Upcycling" known molecules and targets for drug-resistant TB.Frontiers in cellular and infection microbiology · 2022
    Article
  7. Tuberculosis Drug Discovery: A Decade of Hit Assessment for Defined Targets.Frontiers in cellular and infection microbiology · 2021
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Construction of an overexpression library forBiology methods & protocols · 2018
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Shilah A BonnettTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
Juliane OllingerTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
Susantha ChandrasekeraTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
Stephanie FlorioTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
Theresa O'MalleyTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
Megan FilesTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
Jo-Ann JeeTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
James AhnTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
Allen CaseyTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
Yulia OvechkinaTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
David RobertsTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
Aaron KorkegianTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
Tanya ParishTB Discovery Research, Infectious Disease Research Institute , 1616 Eastlake Avenue East, Suite 400, Seattle, Washington 98102, United States.
Infectious Disease Research Institute · US

Funding

High throughput assays to detect inhibition of a key M. tuberculosis proteaseR01AI095652 · NIAID · ACCESS TO ADVANCED HEALTH INSTITUTE · PI PARISH, TANYA · 2013 to 2015
$1.1M
High throughput assays to detect inhibition of a key M. tuberculosis proteaseR56AI095652 · NIAID · ACCESS TO ADVANCED HEALTH INSTITUTE · PI PARISH, TANYA · 2011 to 2011
$396k
NIAID NIH HHS R01 AI095652NIAID NIH HHS R56 AI095652
6 · The paper itself

Abstract

The general secretion (Sec) pathway is a conserved essential pathway in bacteria and is the primary route of protein export across the cytoplasmic membrane. During protein export, the signal peptidase LepB catalyzes the cleavage of the signal peptide and subsequent release of mature proteins into the extracellular space. We developed a target-based whole cell assay to screen for potential inhibitors of LepB, the sole signal peptidase in Mycobacterium tuberculosis, using a strain engineered to underexpress LepB (LepB-UE). We screened 72,000 compounds against both the Lep-UE and wild-type (wt) strains. We identified the phenylhydrazone (PHY) series as having higher activity against the LepB-UE strain. We conducted a limited structure-activity relationship determination around a representative PHY compound with differential activity (MICs of 3.0 μM against the LepB-UE strain and 18 μM against the wt); several analogues were less potent against the LepB overexpressing strain. A number of chemical modifications around the hydrazone moiety resulted in improved potency. Inhibition of LepB activity was observed for a number of compounds in a biochemical assay using cell membrane fraction derived from M. tuberculosis. Compounds did not increase cell permeability, dissipate membrane potential, or inhibit an unrelated mycobacterial enzyme, suggesting a specific mode of action related to the LepB secretory mechanism.

Indexed as

Antitubercular AgentsBacterial ProteinsEnzyme InhibitorsHumansKineticsMembrane ProteinsMicrobial Sensitivity TestsMycobacterium tuberculosisSerine EndopeptidasesStructure-Activity RelationshipTuberculosisAntitubercular AgentsBacterial ProteinsEnzyme InhibitorsMembrane ProteinsSerine Endopeptidasestype I signal peptidasephenotypic screenphenylhydrazonessignal peptidasetuberculosis

Identifiers

PMID27642770
PMCPMC5215716
OpenAlexW2511762534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.