Evidence map›Paper›PMID 27636899›Full record

ArticleProtein science : a publication of the Protein Society2016

Solution structure of protein synthesis initiation factor 1 from Pseudomonas aeruginosa.

Yanmei Hu, Alejandra Bernal, James M Bullard, Yonghong Zhang

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yanmei HuDepartment of Chemistry, The University of Texas Rio Grande Valley, Edinburg, Texas.
Alejandra BernalDepartment of Chemistry, The University of Texas Rio Grande Valley, Edinburg, Texas.
James M BullardDepartment of Chemistry, The University of Texas Rio Grande Valley, Edinburg, Texas.
Yonghong ZhangDepartment of Chemistry, The University of Texas Rio Grande Valley, Edinburg, Texas.ORCID 0000-0002-7305-9295
The University of Texas Rio Grande Valley · US

Funding

Construction of a Protein Synthesis System from Pseudomonas aeruginosa for Screening for Antibacterial CandidatesSC3GM098173 · NIGMS · UNIVERSITY OF TEXAS RIO GRANDE VALLEY · PI BULLARD, JAMES M · 2012 to 2019
$861k
NIGMS NIH HHS SC3 GM098173
6 · The paper itself

Abstract

Pseudomonas aeruginosa is an opportunistic bacterial pathogen and a primary cause of nosocomial infection in humans. The rate of antibiotic resistance in P. aeruginosa is increasing worldwide leading to an unmet need for discovery of new chemical compounds distinctly different from present antimicrobials. Protein synthesis is an essential metabolic process and a validated target for the development of new antibiotics. Initiation factor 1 from P. aeruginosa (Pa-IF1) is the smallest of the three initiation factors that act to establish the 30S initiation complex during initiation of protein biosynthesis. Here we report the characterization and solution NMR structure of Pa-IF1. Pa-IF1 consists of a five-stranded β-sheet with an unusual extended β-strand at the C-terminus and one short α-helix arranged in the sequential order β1-β2-β3-α1-β4-β5. The structure adopts a typical β-barrel fold and contains an oligomer-binding motif. A cluster of basic residues (K39, R41, K42, K64, R66, R70, and R72) located on the surface of strands β4 and β5 near the short α-helix may compose the binding interface with the 30S subunit.

Indexed as

Amino Acid MotifsBacterial ProteinsNuclear Magnetic Resonance, BiomolecularProkaryotic Initiation Factor-1Protein DomainsPseudomonas aeruginosaBacterial ProteinsProkaryotic Initiation Factor-1NMR structurePseudomonas aeruginosatranslation initiation factor 1β-barrel motif

Identifiers

PMID27636899
PMCPMC5119568
OpenAlexW2522764979

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.