Evidence map›Paper›PMID 27636738›Full record

ArticleACS nano2016

High-Resolution Analysis of Antibodies to Post-Translational Modifications Using Peptide Nanosensor Microarrays.

Jung-Rok Lee, D James Haddon, Nidhi Gupta, Jordan V Price, Grace M Credo, Vivian K Diep, Kyunglok Kim, Drew A Hall, Emily C Baechler, Michelle Petri and 3 more

Abstract read
In one paragraph

Article in ACS nano, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Jung-Rok Lee
D James Haddon
Nidhi GuptaIntel Corporation , Santa Clara, California 95052, United States.
Jordan V PriceDepartment of Molecular and Cell Biology, Division of Immunology and Pathogenesis, University of California , Berkeley, California 94720, United States.
Grace M CredoIntel Corporation , Santa Clara, California 95052, United States.
Vivian K Diep
Kyunglok Kim
Drew A HallDepartment of Electrical and Computer Engineering, University of California , San Diego, California 92093, United States.
Emily C BaechlerCenter for Immunology, University of Minnesota Medical School , Minneapolis, Minnesota 55455, United States.
Michelle PetriDivision of Rheumatology, Johns Hopkins University School of Medicine , Baltimore, Maryland 21205, United States.
Madoo VarmaIntel Corporation , Santa Clara, California 95052, United States.
Paul J UtzInstitute for Immunity, Transplantation, and Infection, Stanford University School of Medicine , Stanford, California 94305, United States.
Shan X Wang
Intel (United States) · USJohns Hopkins Medicine · USStanford University · USUniversity of California, Berkeley · USUniversity of California, San Diego · USUniversity of Minnesota Medical Center · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007365 · NIGMS · STANFORD UNIVERSITY · PI CHUA, KATRIN F · 1985 to 2021
$33.8M
Autoimmunity Center of Excellence Clinical Research ProgramUM1AI110498 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WOFSY, DAVID · 2014 to 2019
$31.4M
Vaccination and infection: indicators of immunological health and responsivenessU19AI090019 · NIAID · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 2010 to 2015
$17.3M
TRANS-NETWORK PROJECTSU54CA143907 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GROSS, MITCHELL E · 2009 to 2013
$15.2M
Pilot ProjectsU54CA151459 · NCI · STANFORD UNIVERSITY · PI GAMBHIR, SANJIV S · 2010 to 2014
$12.6M
Lupus CohortR01AR043727 · NIAMS · JOHNS HOPKINS UNIVERSITY · PI PETRI, MICHELLE A · 1997 to 2015
$8.2M
Tissue Acquisition Research GroupUM2AR067678 · NIAMS · STANFORD UNIVERSITY · PI HOLERS, VERNON MICHAEL, UTZ, PAUL JOSEPH · 2014 to 2020
$8.2M
Ultra-Fast Epigenomic Maps for Monitoring AutoimmunityU19AI110491 · NIAID · STANFORD UNIVERSITY · PI UTZ, PAUL JOSEPH · 2014 to 2018
$3.6M
Th17 lymphocytes in human autoimmune diseasesU19AI082719 · NIAID · STANFORD UNIVERSITY · PI FATHMAN, CHARLES GARRISON · 2009 to 2013
$3.4M
Stanford Technology Accelerating Medicines Partnership CenterUH2AR067676 · NIAMS · STANFORD UNIVERSITY · PI ROBINSON, WILLIAM H, UTZ, PAUL JOSEPH · 2014 to 2020
$2.6M
CIHRNCI NIH HHS U54 CA143907NCI NIH HHS U54 CA151459NHLBI NIH HHS HHSN268201000034CNIAID NIH HHS U19 AI082719NIAID NIH HHS U19 AI090019NIAID NIH HHS U19 AI110491NIAID NIH HHS UM1 AI110498NIAMS NIH HHS R01 AR043727NIAMS NIH HHS UH2 AR067676NIAMS NIH HHS UM2 AR067678NIGMS NIH HHS T32 GM007365
6 · The paper itself

Abstract

Autoantibodies are a hallmark of autoimmune diseases such as lupus and have the potential to be used as biomarkers for diverse diseases, including immunodeficiency, infectious disease, and cancer. More precise detection of antibodies to specific targets is needed to improve diagnosis of such diseases. Here, we report the development of reusable peptide microarrays, based on giant magnetoresistive (GMR) nanosensors optimized for sensitively detecting magnetic nanoparticle labels, for the detection of antibodies with a resolution of a single post-translationally modified amino acid. We have also developed a chemical regeneration scheme to perform multiplex assays with a high level of reproducibility, resulting in greatly reduced experimental costs. In addition, we show that peptides synthesized directly on the nanosensors are approximately two times more sensitive than directly spotted peptides. Reusable peptide nanosensor microarrays enable precise detection of autoantibodies with high resolution and sensitivity and show promise for investigating antibody-mediated immune responses to autoantigens, vaccines, and pathogen-derived antigens as well as other fundamental peptide-protein interactions.

Indexed as

AutoantibodiesPeptidesProtein Array AnalysisProtein Processing, Post-TranslationalAutoantigensReproducibility of ResultsAutoantibodiesAutoantigensPeptidesautoantibodygiant magnetoresistancelupusnanosensorspeptide microarrayregeneration

Identifiers

PMID27636738
PMCPMC5367622
OpenAlexW2520725488

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.