Evidence map›Paper›PMID 27636550›Full record

ArticlePloS one2016

A European Spectrum of Pharmacogenomic Biomarkers: Implications for Clinical Pharmacogenomics.

Clint Mizzi, Eleni Dalabira, Judit Kumuthini, Nduna Dzimiri, Istvan Balogh, Nazli Başak, Ruwen Böhm, Joseph Borg, Paola Borgiani, Nada Bozina and 40 more

Erratum issuedAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 65 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
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  5. Article
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  17. Can Pharmacogenetic Variants inInternational journal of molecular sciences · 2023
    Article
  18. Article
  19. Observational
  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

50 authors.

Clint MizziErasmus University Medical Center, Faculty of Medicine, Department of Bioinformatics, Rotterdam, the Netherlands.
Eleni DalabiraUniversity of Patras School of Health Sciences, Department of Pharmacy, Patras, Greece.
Judit KumuthiniCenter for Proteomic and Genomic Research, Observatory, Cape Town, South Africa.
Nduna DzimiriKing Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.
Istvan BaloghUniversity of Debrecen, Debrecen, Hungary.
Nazli BaşakBoğaziçi University, Istanbul, Turkey.
Ruwen BöhmUniversity of Kiel, Institute for Experimental and Clinical Pharmacology, Kiel, Germany.
Joseph BorgUniversity of Malta, Department of Applied Biomedical Science, Faculty of Health Sciences, Msida, Malta.
Paola BorgianiUniversity of Rome "Tor Vergata", Department of Biomedicine and Prevention, Rome, Italy.
Nada BozinaUniversity Hospital Centre, Zagreb, Croatia.
Henrike BruckmuellerUniversity of Kiel, Institute for Experimental and Clinical Pharmacology, Kiel, Germany.
Beata BurzynskaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Angel CarracedoUniversity of Santiago de Compostela, Santiago, Spain.
Ingolf CascorbiUniversity of Kiel, Institute for Experimental and Clinical Pharmacology, Kiel, Germany.
Constantinos DeltasUniversity of Cyprus, Molecular Medicine Research Center, Department of Biological Sciences, Nicosia, Cyprus.
Vita DolzanUniversity of Ljubljana Faculty of Medicine, Ljubljana, Slovenia.
Anthony FenechUniversity of Malta, Faculty of Medicine, Department of Surgery, Msida, Malta.
Godfrey GrechUniversity of Malta, Faculty of Medicine, Department of Surgery, Msida, Malta.
Vytautas KasiuleviciusDepartment of Human and Medical Genetics, Faculty of Medicine, Vilnius University, Vilnius, Lithuania.
Ľudevít KádašiComenius University, Faculty of Natural Sciences, Bratislava, Slovakia.
Vaidutis KučinskasDepartment of Human and Medical Genetics, Faculty of Medicine, Vilnius University, Vilnius, Lithuania.
Elza KhusnutdinovaInstitute of Biochemistry and Genetics, Ufa Scientific Center, Russian Academy of Sciences, Ufa, Russia.
Yiannis L LoukasUniversity of Athens, Faculty of Pharmacy, Department of Pharmaceutical Chemistry, Athens, Greece.
Milan MacekCharles University, 2nd Faculty of Medicine and University Hospital Motol, Prague, Czech Republic.
Halyna MakukhInstitute of Hereditary Pathology, Ukrainian National Academy of Medical Sciences, Lviv, Ukraine.
Ron MathijssenErasmus University Medical Center, Department of Clinical Chemistry, Rotterdam, the Netherlands.
Konstantinos MitropoulosThe Golden Helix Foundation, London, United Kingdom.
Christina MitropoulouErasmus University Medical Center, Department of Clinical Chemistry, Rotterdam, the Netherlands.
Giuseppe NovelliUniversity of Rome "Tor Vergata", Department of Biomedicine and Prevention, Rome, Italy.
Ioanna PapantoniUniversity of Patras School of Health Sciences, Department of Pharmacy, Patras, Greece.
Sonja PavlovicInstitute of Molecular Genetics and Genetic Engineering University of Belgrade, Laboratory of Molecular Biomedicine, Belgrade, Serbia.
Giuseppe SaglioUniversity of Turin School of Medicine, Turin, Italy.
Jadranka SetricUniversity Hospital Centre, Zagreb, Croatia.
Maja StojiljkovicInstitute of Molecular Genetics and Genetic Engineering University of Belgrade, Laboratory of Molecular Biomedicine, Belgrade, Serbia.
Andrew P StubbsErasmus University Medical Center, Faculty of Medicine, Department of Bioinformatics, Rotterdam, the Netherlands.
Alessio SquassinaUniversity of Cagliari, Department of Biomedical Sciences, Cagliari, Italy.
Maria TorresUniversity of Santiago de Compostela, Santiago, Spain.
Marek TurnovecCharles University, 2nd Faculty of Medicine and University Hospital Motol, Prague, Czech Republic.
Ron H van SchaikErasmus University Medical Center, Department of Clinical Chemistry, Rotterdam, the Netherlands.
Konstantinos VoskaridesUniversity of Cyprus, Molecular Medicine Research Center, Department of Biological Sciences, Nicosia, Cyprus.
Salma M WakilKing Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.
Anneke WerkUniversity of Kiel, Institute for Experimental and Clinical Pharmacology, Kiel, Germany.
Maria Del ZompoUniversity of Cagliari, Department of Biomedical Sciences, Cagliari, Italy.
Branka ZukicInstitute of Molecular Genetics and Genetic Engineering University of Belgrade, Laboratory of Molecular Biomedicine, Belgrade, Serbia.
Theodora KatsilaUniversity of Patras School of Health Sciences, Department of Pharmacy, Patras, Greece.
Ming Ta Michael LeeRIKEN Institute, Center for Genomic Medicine, Laboratory for International Alliance, Yokohama, Japan.
Alison Motsinger-RiefNorth Carolina State University, Department of Statistics, Raleigh, NC, United States of America.
Howard L Mc LeodMoffitt Cancer Center, Tampa, FL, United States of America.
Peter J van der SpekErasmus University Medical Center, Faculty of Medicine, Department of Bioinformatics, Rotterdam, the Netherlands.
George P PatrinosErasmus University Medical Center, Faculty of Medicine, Department of Bioinformatics, Rotterdam, the Netherlands.

Funding

H3ABioNet: a sustainable African Bioinformatics Network for H3AfricaU41HG006941 · NHGRI · UNIVERSITY OF CAPE TOWN · PI MULDER, NICOLA · 2012 to 2017
$14.8M
NHGRI NIH HHS U41 HG006941
6 · The paper itself

Abstract

Pharmacogenomics aims to correlate inter-individual differences of drug efficacy and/or toxicity with the underlying genetic composition, particularly in genes encoding for protein factors and enzymes involved in drug metabolism and transport. In several European populations, particularly in countries with lower income, information related to the prevalence of pharmacogenomic biomarkers is incomplete or lacking. Here, we have implemented the microattribution approach to assess the pharmacogenomic biomarkers allelic spectrum in 18 European populations, mostly from developing European countries, by analyzing 1,931 pharmacogenomics biomarkers in 231 genes. Our data show significant inter-population pharmacogenomic biomarker allele frequency differences, particularly in 7 clinically actionable pharmacogenomic biomarkers in 7 European populations, affecting drug efficacy and/or toxicity of 51 medication treatment modalities. These data also reflect on the differences observed in the prevalence of high-risk genotypes in these populations, as far as common markers in the CYP2C9, CYP2C19, CYP3A5, VKORC1, SLCO1B1 and TPMT pharmacogenes are concerned. Also, our data demonstrate notable differences in predicted genotype-based warfarin dosing among these populations. Our findings can be exploited not only to develop guidelines for medical prioritization, but most importantly to facilitate integration of pharmacogenomics and to support pre-emptive pharmacogenomic testing. This may subsequently contribute towards significant cost-savings in the overall healthcare expenditure in the participating countries, where pharmacogenomics implementation proves to be cost-effective.

Indexed as

Genetic MarkersPharmacogeneticsAnticoagulantsCluster AnalysisCytochrome P-450 CYP2C9EthnicityEuropeHumansVitamin K Epoxide ReductasesWarfarinAnticoagulantsCytochrome P-450 CYP2C9Genetic MarkersVitamin K Epoxide ReductasesVKORC1 protein, humanWarfarin

Identifiers

PMID27636550
PMCPMC5026342

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.