Evidence map›Paper›PMID 27634379›Full record

ArticleBMC medical genetics2016

Segregation between SMCHD1 mutation, D4Z4 hypomethylation and Facio-Scapulo-Humeral Dystrophy: a case report.

Marie-Cécile Gaillard, Francesca Puppo, Stéphane Roche, Camille Dion, Emmanuelle Salort Campana, Virginie Mariot, Charlene Chaix, Catherine Vovan, Killian Mazaleyrat, Armand Tasmadjian and 7 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC medical genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 1 country.

Marie-Cécile GaillardAix Marseille Univ, INSERM, GMGF, Marseille, France.
Francesca PuppoAix Marseille Univ, INSERM, GMGF, Marseille, France.
Stéphane RocheAix Marseille Univ, INSERM, GMGF, Marseille, France.
Camille DionAix Marseille Univ, INSERM, GMGF, Marseille, France.
Emmanuelle Salort CampanaAix Marseille Univ, INSERM, GMGF, Marseille, France.
Virginie MariotCenter of Research in Myology/ Institut de Myologie UMR974 - UPMC Université Paris 6/ Inserm /FRE3617- CNRS, Groupement Hospitalier de la Pitié Salpétrière, Paris, Cedex 13, France.
Charlene ChaixAPHM, Laboratoire de Génétique Médicale, Hôpital de la Timone, Marseille, 13385, France.
Catherine VovanAPHM, Laboratoire de Génétique Médicale, Hôpital de la Timone, Marseille, 13385, France.
Killian MazaleyratAix Marseille Univ, INSERM, GMGF, Marseille, France.
Armand TasmadjianAix Marseille Univ, INSERM, GMGF, Marseille, France.
Rafaelle BernardAix Marseille Univ, INSERM, GMGF, Marseille, France.
Julie DumonceauxCenter of Research in Myology/ Institut de Myologie UMR974 - UPMC Université Paris 6/ Inserm /FRE3617- CNRS, Groupement Hospitalier de la Pitié Salpétrière, Paris, Cedex 13, France.
Shahram AttarianAix Marseille Univ, INSERM, GMGF, Marseille, France.
Nicolas LévyAix Marseille Univ, INSERM, GMGF, Marseille, France.
Karine NguyenAix Marseille Univ, INSERM, GMGF, Marseille, France.
Frédérique MagdinierAix Marseille Univ, INSERM, GMGF, Marseille, France. frederique.magdinier@univ-amu.fr.
Marc BartoliAix Marseille Univ, INSERM, GMGF, Marseille, France.
Inserm · FRAix-Marseille Université · FRHôpital de la Timone · FRGénétique Médicale & Génomique Fonctionelle · FRInstitut de Myologie · FRLaboratoire de Génétique MédicaleSorbonne Université · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe main form of Facio-Scapulo-Humeral muscular Dystrophy is linked to copy number reduction of the 4q D4Z4 macrosatellite (FSHD1). In 5 % of cases, FSHD phenotype appears in the absence of D4Z4 reduction (FSHD2). In 70-80 % of these patients, variants of the SMCHD1 gene segregate with 4qA haplotypes and D4Z4 hypomethylation. CASE PRESENTATION: We report a family presenting with neuromuscular symptoms reminiscent of FSHD but without D4Z4 copy reduction. We characterized the 4q35 region using molecular combing, searched for mutation in the SMCHD1 gene and determined D4Z4 methylation level by sodium bisulfite sequencing. We further investigated the impact of the SMCHD1 mutation at the protein level and on the NMD-dependent degradation of transcript. In muscle, we observe moderate but significant reduction in D4Z4 methylation, not correlated with DUX4-fl expression. Exome sequencing revealed a heterozygous insertion of 7 bp in exon 37 of the SMCHD1 gene producing a loss of frame with premature stop codon 4 amino acids after the insertion (c.4614-4615insTATAATA). Both wild-type and mutated transcripts are detected.

conclusionThe truncated protein is absent and the full-length protein level is similar in patients and controls indicating that in this family, FSHD is not associated with SMCHD1 haploinsufficiency.

Indexed as

DNA MethylationMicrosatellite RepeatsMutationChromosomal Proteins, Non-HistoneChromosome SegregationChromosomes, Human, Pair 4HumansMuscular Dystrophy, FacioscapulohumeralPedigreeChromosomal Proteins, Non-HistoneSMCHD1 protein, humanDNA combingDNA methylationDUX4Facio-Scapulo-Humeral DystrophyHaploinsufficiencySMCHD1

Identifiers

PMID27634379
PMCPMC5025538
OpenAlexW2520022472

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.