Evidence map›Paper›PMID 27631702›Full record

ArticleCell host & microbe2016

Identification of Interferon-Stimulated Genes with Antiretroviral Activity.

Melissa Kane, Trinity M Zang, Suzannah J Rihn, Fengwen Zhang, Tonya Kueck, Mudathir Alim, John Schoggins, Charles M Rice, Sam J Wilson, Paul D Bieniasz

Open access · hybridAbstract read
In one paragraph

Article in Cell host & microbe, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 184 papers.

0numbers the graph read from it
0cells of the map it votes in
184citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

184 citing papers in PubMed, 277 citations in OpenAlex.

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124 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Melissa KaneAaron Diamond AIDS Research Center, The Rockefeller University, New York, NY 10065, USA; Laboratory of Retrovirology, The Rockefeller University, New York, NY 10065, USA.
Trinity M ZangAaron Diamond AIDS Research Center, The Rockefeller University, New York, NY 10065, USA; Laboratory of Retrovirology, The Rockefeller University, New York, NY 10065, USA; Howard Hughes Medical Institute, Aaron Diamond AIDS Research Center, New York, NY 10016 USA.
Suzannah J RihnMRC-University of Glasgow Centre for Virus Research, Institute of Infection, Inflammation and Immunity, University of Glasgow, Glasgow G61 1QH, UK.
Fengwen ZhangAaron Diamond AIDS Research Center, The Rockefeller University, New York, NY 10065, USA; Laboratory of Retrovirology, The Rockefeller University, New York, NY 10065, USA.
Tonya KueckAaron Diamond AIDS Research Center, The Rockefeller University, New York, NY 10065, USA; Laboratory of Retrovirology, The Rockefeller University, New York, NY 10065, USA.
Mudathir AlimAaron Diamond AIDS Research Center, The Rockefeller University, New York, NY 10065, USA; Laboratory of Retrovirology, The Rockefeller University, New York, NY 10065, USA.
John SchogginsDepartment of Microbiology, UT Southwestern Medical Center, Dallas, TX 75390, USA.
Charles M RiceLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.
Sam J WilsonMRC-University of Glasgow Centre for Virus Research, Institute of Infection, Inflammation and Immunity, University of Glasgow, Glasgow G61 1QH, UK. Electronic address: sam.wilson@glasgow.ac.uk.
Paul D BieniaszAaron Diamond AIDS Research Center, The Rockefeller University, New York, NY 10065, USA; Laboratory of Retrovirology, The Rockefeller University, New York, NY 10065, USA; Howard Hughes Medical Institute, Aaron Diamond AIDS Research Center, New York, NY 10016 USA. Electronic address: pbienias@adarc.org.
Aaron Diamond AIDS Research Center · USMRC University of Glasgow Centre for Virus Research · GBRockefeller University · USThe University of Texas Southwestern Medical Center · US

Funding

Type I interferon-stimulated genes and the antiviral immune responseR01AI091707 · NIAID · ROCKEFELLER UNIVERSITY · PI RICE, CHARLES M · 2011 to 2020
$5.5M
Discovery and Mechanism of Antiretroviral FactorsR37AI064003 · NIAID · ROCKEFELLER UNIVERSITY · PI BIENIASZ, PAUL D. · 2011 to 2020
$4.9M
Mechanism of lentiviral inhibition by Mx2F32AI116263 · NIAID · ROCKEFELLER UNIVERSITY · PI KANE, MELISSA E · 2015 to 2017
$179k
Medical Research Council G0801822Medical Research Council MC_UU_12014/10Medical Research Council MR/K024752/1NIAID NIH HHS F32 AI116263NIAID NIH HHS R01 AI091707NIAID NIH HHS R37 AI064003
6 · The paper itself

Abstract

Interferons (IFNs) exert their anti-viral effects by inducing the expression of hundreds of IFN-stimulated genes (ISGs). The activity of known ISGs is insufficient to account for the antiretroviral effects of IFN, suggesting that ISGs with antiretroviral activity are yet to be described. We constructed an arrayed library of ISGs from rhesus macaques and tested the ability of hundreds of individual macaque and human ISGs to inhibit early and late replication steps for 11 members of the retroviridae from various host species. These screens uncovered numerous ISGs with antiretroviral activity at both the early and late stages of virus replication. Detailed analyses of two antiretroviral ISGs indicate that indoleamine 2,3-dioxygenase 1 (IDO1) can inhibit retroviral replication by metabolite depletion while tripartite motif-56 (TRIM56) accentuates ISG induction by IFNα and inhibits the expression of late HIV-1 genes. Overall, these studies reveal numerous host proteins that mediate the antiretroviral activity of IFNs.

Indexed as

Virus ReplicationAnimalsAntiviral AgentsGene LibraryGenetic TestingHumansIndoleamine-Pyrrole 2,3,-DioxygenaseInterferonsMacaca mulattaRetroviridaeUbiquitin-Protein LigasesAntiviral AgentsIndoleamine-Pyrrole 2,3,-DioxygenaseInterferonsUbiquitin-Protein Ligases

Identifiers

PMID27631702
PMCPMC5026698
OpenAlexW2519084386

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.