Evidence map›Paper›PMID 27631568›Full record

ArticlePLoS biology2016

Mitochondrial 16S rRNA Is Methylated by tRNA Methyltransferase TRMT61B in All Vertebrates.

Dan Bar-Yaacov, Idan Frumkin, Yuka Yashiro, Takeshi Chujo, Yuma Ishigami, Yonatan Chemla, Amit Blumberg, Orr Schlesinger, Philipp Bieri, Basil Greber and 6 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 130 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. RNA modification systems as therapeutic targets.Nature reviews. Drug discovery · 2026
    Review
  8. Review
  9. Article
  10. Advances in RNA modification in myocardial fibrosis (Review).International journal of molecular medicine · 2025
    Review
  11. Article
  12. Article
  13. Review
  14. The Secret Life of NJournal of molecular biology · 2025
    Review
  15. Article
  16. Article
  17. Review
  18. Methyladenine as a regulator of biomolecular condensation.Frontiers in molecular biosciences · 2025
    Review
  19. The role of m5C, m1A and m7G modifications in tumors of urinary system.Frontiers in cell and developmental biology · 2025
    Review
  20. Review

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 3 countries.

Dan Bar-YaacovDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.
Idan FrumkinDepartment of Molecular Genetics, the Weizmann Institute of Science, Rehovot, Israel.
Yuka YashiroDepartment of Chemistry and Biotechnology, University of Tokyo, Tokyo, Japan.
Takeshi ChujoDepartment of Chemistry and Biotechnology, University of Tokyo, Tokyo, Japan.ORCID 0000-0003-2393-5776
Yuma IshigamiDepartment of Chemistry and Biotechnology, University of Tokyo, Tokyo, Japan.ORCID 0000-0002-5704-291X
Yonatan ChemlaDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.ORCID 0000-0002-0465-9393
Amit BlumbergDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.ORCID 0000-0001-5257-3722
Orr SchlesingerDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.
Philipp BieriDepartment of Biology, Institute of Molecular Biology and Biophysics, Zurich, Switzerland.
Basil GreberDepartment of Biology, Institute of Molecular Biology and Biophysics, Zurich, Switzerland.
Nenad BanDepartment of Biology, Institute of Molecular Biology and Biophysics, Zurich, Switzerland.
Raz ZarivachDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.
Lital AlfontaDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.
Yitzhak PilpelDepartment of Molecular Genetics, the Weizmann Institute of Science, Rehovot, Israel.
Tsutomu SuzukiDepartment of Chemistry and Biotechnology, University of Tokyo, Tokyo, Japan.
Dan MishmarDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.
Ben-Gurion University of the Negev · ILThe University of Tokyo · JPInstitute of Molecular Biology and Biophysics · RUWeizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mitochondrial ribosome, which translates all mitochondrial DNA (mtDNA)-encoded proteins, should be tightly regulated pre- and post-transcriptionally. Recently, we found RNA-DNA differences (RDDs) at human mitochondrial 16S (large) rRNA position 947 that were indicative of post-transcriptional modification. Here, we show that these 16S rRNA RDDs result from a 1-methyladenosine (m1A) modification introduced by TRMT61B, thus being the first vertebrate methyltransferase that modifies both tRNA and rRNAs. m1A947 is conserved in humans and all vertebrates having adenine at the corresponding mtDNA position (90% of vertebrates). However, this mtDNA base is a thymine in 10% of the vertebrates and a guanine in the 23S rRNA of 95% of bacteria, suggesting alternative evolutionary solutions. m1A, uridine, or guanine may stabilize the local structure of mitochondrial and bacterial ribosomes. Experimental assessment of genome-edited Escherichia coli showed that unmodified adenine caused impaired protein synthesis and growth. Our findings revealed a conserved mechanism of rRNA modification that has been selected instead of DNA mutations to enable proper mitochondrial ribosome function.

Indexed as

RNA Processing, Post-TranscriptionalAdenosineAnimalsEscherichia coliHeLa CellsHumansMethylationMitochondriaRNARNA, BacterialRNA, MitochondrialRNA, Ribosomal, 16StRNA Methyltransferases1-methyladenosineAdenosineRNARNA, BacterialRNA, MitochondrialRNA, Ribosomal, 16STrmt61B protein, humantRNA Methyltransferases

Identifiers

PMID27631568
PMCPMC5025228
OpenAlexW2519835902

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.