ReviewJournal of molecular graphics & modelling2016
Open source molecular modeling.
Review in Journal of molecular graphics & modelling, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
21 citing papers in PubMed.
- Open-Source Machine Learning in Computational Chemistry.Journal of chemical information and modeling · 2023Review
- Curcumin Chalcone Derivatives Database (CCDD): a Python framework for natural compound derivatives database.PeerJ · 2023Article
- Automated Exploration of Prebiotic Chemical Reaction Space: Progress and Perspectives.Life (Basel, Switzerland) · 2021Review
- Incorporation ofMolecules (Basel, Switzerland) · 2021Article
- Screening possible drug molecules for Covid-19. The example of vanadium (III/IV/V) complex molecules with computational chemistry and molecular docking.Computational toxicology (Amsterdam, Netherlands) · 2021Article
- Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models.IEEE transactions on visualization and computer graphics · 2021Article
- Deep learning of pharmacogenomics resources: moving towards precision oncology.Briefings in bioinformatics · 2020Article
- Molassembler: Molecular Graph Construction, Modification, and Conformer Generation for Inorganic and Organic Molecules.Journal of chemical information and modeling · 2020Article
- A simple open source bioinformatic methodology for initial exploration of GPCR ligands' agonistic/antagonistic properties.Pharmacology research & perspectives · 2020Article
- ProteinsPlus: interactive analysis of protein-ligand binding interfaces.Nucleic acids research · 2020Article
- Zebra2: advanced and easy-to-use web-server for bioinformatic analysis of subfamily-specific and conserved positions in diverse protein superfamilies.Nucleic acids research · 2020Article
- The C++ programming language in cheminformatics and computational chemistry.Journal of cheminformatics · 2020Review
- Analysing non-synonymous mutations in XDR and MDR tuberculosis drugs.Journal of clinical tuberculosis and other mycobacterial diseases · 2019Article
- TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data.Journal of cheminformatics · 2019Article
- ezCADD: A Rapid 2D/3D Visualization-Enabled Web Modeling Environment for Democratizing Computer-Aided Drug Design.Journal of chemical information and modeling · 2019Article
- NGL viewer: web-based molecular graphics for large complexes.Bioinformatics (Oxford, England) · 2018Article
- Developing novel methods to image and visualize 3D genomes.Cell biology and toxicology · 2018Review
- Accessible virtual reality of biomolecular structural models using the Autodesk Molecule Viewer.Nature methods · 2017Article
- Chemotion ELN: an Open Source electronic lab notebook for chemists in academia.Journal of cheminformatics · 2017Article
- Web3DMol: interactive protein structure visualization based on WebGL.Nucleic acids research · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
The success of molecular modeling and computational chemistry efforts are, by definition, dependent on quality software applications. Open source software development provides many advantages to users of modeling applications, not the least of which is that the software is free and completely extendable. In this review we categorize, enumerate, and describe available open source software packages for molecular modeling and computational chemistry. An updated online version of this catalog can be found at https://opensourcemolecularmodeling.github.io.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.