Evidence map›Paper›PMID 27629418›Full record

ArticleThe Journal of biological chemistry2016

Generation of a Mutant Mucor hiemalis Endoglycosidase That Acts on Core-fucosylated N-Glycans.

Toshihiko Katoh, Takane Katayama, Yusuke Tomabechi, Yoshihide Nishikawa, Jyunichi Kumada, Yuji Matsuzaki, Kenji Yamamoto

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. European journal of organic chemistry · 2020
    Article
  3. Structural basis for the specific cleavage of core-fucosylatedThe Journal of biological chemistry · 2019
    Article
  4. Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Toshihiko KatohFrom the Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan, tkatoh@lif.kyoto-u.ac.jp.
Takane KatayamaFrom the Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
Yusuke Tomabechithe Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Nonoichi, Ishikawa 921-8836, Japan, and.
Yoshihide NishikawaTokyo Chemical Industry Co., Ltd., 6-15-9 Toshima, Kita-ku, Tokyo 114-0003, Japan.
Jyunichi KumadaTokyo Chemical Industry Co., Ltd., 6-15-9 Toshima, Kita-ku, Tokyo 114-0003, Japan.
Yuji MatsuzakiTokyo Chemical Industry Co., Ltd., 6-15-9 Toshima, Kita-ku, Tokyo 114-0003, Japan.
Kenji Yamamotothe Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Nonoichi, Ishikawa 921-8836, Japan, and.
Ishikawa Prefectural University · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endo-β-N-acetylglucosaminidase M (Endo-M), an endoglycosidase from the fungus Mucor hiemalis, is a useful tool for chemoenzymatic synthesis of glycoconjugates, including glycoprotein-based therapeutics having a precisely defined glycoform, by virtue of its transglycosylation activity. Although Endo-M has been known to act on various N-glycans, it does not act on core-fucosylated N-glycans, which exist widely in mammalian glycoproteins, thus limiting its application. Therefore, we performed site-directed mutagenesis on Endo-M to isolate mutant enzymes that are able to act on mammalian-type core-α1,6-fucosylated glycans. Among the Endo-M mutant enzymes generated, those in which the tryptophan at position 251 was substituted with alanine or asparagine showed altered substrate specificities. Such mutant enzymes exhibited increased hydrolysis of a synthetic α1,6-fucosylated trimannosyl core structure, whereas their activity on the afucosylated form decreased. In addition, among the Trp-251 mutants, the W251N mutant was most efficient in hydrolyzing the core-fucosylated substrate. W251N mutants could act on the immunoglobulin G-derived core-fucosylated glycopeptides and human lactoferrin glycoproteins. This mutant was also capable of transferring the sialyl glycan from an activated substrate intermediate (sialyl glyco-oxazoline) onto an α1,6-fucosyl-N-acetylglucosaminyl biotin. Furthermore, the W251N mutant gained a glycosynthase-like activity when a N175Q substitution was introduced and it caused accumulation of the transglycosylation products. These findings not only give insights into the substrate recognition mechanism of glycoside hydrolase family 85 enzymes but also widen their scope of application in preparing homogeneous glycoforms of core-fucosylated glycoproteins for the production of potent glycoprotein-based therapeutics.

Indexed as

Crystallography, X-RayEnzyme StabilityFungal ProteinsGlycoside HydrolasesGlycosylationKineticsMucorMutagenesis, Site-DirectedPolysaccharidesSubstrate SpecificityFungal ProteinsGlycoside HydrolasesPolysaccharidescore fucoseEndo-Mendo-β-N-acetylglucosaminidaseglycoconjugateglycoproteinglycosidaseglycoside hydrolaseN-linked glycosylationtransglycosylation

Identifiers

PMID27629418
PMCPMC5087746
OpenAlexW2520932666

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.