Evidence map›Paper›PMID 27629350›Full record

ArticleJournal of computer-aided molecular design2016

In search of novel ligands using a structure-based approach: a case study on the adenosine A

Eelke B Lenselink, Thijs Beuming, Corine van Veen, Arnault Massink, Woody Sherman, Herman W T van Vlijmen, Adriaan P IJzerman

Abstract read
In one paragraph

Article in Journal of computer-aided molecular design, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Identification of nanomolar adenosine ANature communications · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Eelke B LenselinkDivision of Medicinal Chemistry, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
Thijs BeumingSchrödinger, Inc., 120 West 45th Street, New York, NY, 10036, USA.
Corine van VeenDivision of Medicinal Chemistry, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
Arnault MassinkDivision of Medicinal Chemistry, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
Woody ShermanSchrödinger, Inc., 120 West 45th Street, New York, NY, 10036, USA.
Herman W T van VlijmenDivision of Medicinal Chemistry, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
Adriaan P IJzermanDivision of Medicinal Chemistry, Leiden Academic Centre for Drug Research, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands. ijzerman@lacdr.leidenuniv.nl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this work, we present a case study to explore the challenges associated with finding novel molecules for a receptor that has been studied in depth and has a wealth of chemical information available. Specifically, we apply a previously described protocol that incorporates explicit water molecules in the ligand binding site to prospectively screen over 2.5 million drug-like and lead-like compounds from the commercially available eMolecules database in search of novel binders to the adenosine A

Indexed as

Adenosine A2 Receptor AgonistsAdenosine A2 Receptor AntagonistsBinding SitesComputer SimulationDatabases, FactualDrug Evaluation, PreclinicalHEK293 CellsHumansLigandsMolecular Docking SimulationMolecular StructureRadioligand AssayReceptor, Adenosine A2AStructure-Activity RelationshipWaterAdenosine A2 Receptor AgonistsAdenosine A2 Receptor AntagonistsLigandsReceptor, Adenosine A2AWaterAdenosine A2A receptorDiverse chemical spaceExplicit waterNovel ligandVirtual screening

Identifiers

PMID27629350
PMCPMC5083784

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.