Evidence map›Paper›PMID 27629034›Full record

ArticleProceedings. Biological sciences2016

Explaining the geographical origins of seasonal influenza A (H3N2).

Frank Wen, Trevor Bedford, Sarah Cobey

Abstract read
In one paragraph

Article in Proceedings. Biological sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
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  10. Antigenic waves of virus-immune coevolution.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Frank WenDepartment of Ecology and Evolution, University of Chicago, 1101 East 57th Street, Chicago, IL 60637, USA frankwen@uchicago.edu.ORCID 0000-0002-9262-1722
Trevor BedfordVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Sarah CobeyDepartment of Ecology and Evolution, University of Chicago, 1101 East 57th Street, Chicago, IL 60637, USA.

Funding

MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
Modeling the Evolutionary Dynamics of Immunity to Influenza for Vaccine DevelopmeDP2AI117921 · NIAID · UNIVERSITY OF CHICAGO · PI COBEY, SARAH · 2014 to 2014
$2.1M
NIAID NIH HHS DP2 AI117921NIGMS NIH HHS T32 GM007281
6 · The paper itself

Abstract

Most antigenically novel and evolutionarily successful strains of seasonal influenza A (H3N2) originate in East, South and Southeast Asia. To understand this pattern, we simulated the ecological and evolutionary dynamics of influenza in a host metapopulation representing the temperate north, tropics and temperate south. Although seasonality and air traffic are frequently used to explain global migratory patterns of influenza, we find that other factors may have a comparable or greater impact. Notably, a region's basic reproductive number (R0) strongly affects the antigenic evolution of its viral population and the probability that its strains will spread and fix globally: a 17-28% higher R0 in one region can explain the observed patterns. Seasonality, in contrast, increases the probability that a tropical (less seasonal) population will export evolutionarily successful strains but alone does not predict that these strains will be antigenically advanced. The relative sizes of different host populations, their birth and death rates, and the region in which H3N2 first appears affect influenza's phylogeography in different but relatively minor ways. These results suggest general principles that dictate the spatial dynamics of antigenically evolving pathogens and offer predictions for how changes in human ecology might affect influenza evolution.

Indexed as

Evolution, MolecularAntigenic VariationGenetics, PopulationHumansInfluenza A Virus, H3N2 SubtypeInfluenza, HumanPhylogeographySeasonsmolecular epidemiologyR0source–sinkviral migration

Identifiers

PMID27629034
PMCPMC5031657

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.