Evidence map›Paper›PMID 27628201›Full record

ArticleThe journal of physical chemistry letters2016

Quasi-elastic Neutron Scattering Reveals Ligand-Induced Protein Dynamics of a G-Protein-Coupled Receptor.

Utsab R Shrestha, Suchithranga M D C Perera, Debsindhu Bhowmik, Udeep Chawla, Eugene Mamontov, Michael F Brown, Xiang-Qiang Chu

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry letters, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Hydration-mediated G-protein-coupled receptor activation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Article
  8. Review
  9. Powdered G-Protein-Coupled Receptors.The journal of physical chemistry letters · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Utsab R ShresthaDepartment of Physics and Astronomy, Wayne State University , Detroit, Michigan 48201, United States.
Suchithranga M D C PereraDepartment of Chemistry and Biochemistry, University of Arizona , Tucson, Arizona 85721, United States.
Debsindhu BhowmikDepartment of Physics and Astronomy, Wayne State University , Detroit, Michigan 48201, United States.
Udeep ChawlaDepartment of Chemistry and Biochemistry, University of Arizona , Tucson, Arizona 85721, United States.
Eugene MamontovChemical and Engineering Materials Division, Oak Ridge National Laboratory , Oak Ridge, Tennessee 37831, United States.
Michael F BrownDepartment of Chemistry and Biochemistry, University of Arizona , Tucson, Arizona 85721, United States.
Xiang-Qiang ChuDepartment of Physics and Astronomy, Wayne State University , Detroit, Michigan 48201, United States.
University of Arizona · USWayne State University · USOak Ridge National Laboratory · US

Funding

MEMBRANE BASIS OF VISUAL EXCITATIONR01EY012049 · NEI · UNIVERSITY OF ARIZONA · PI BROWN, MICHAEL F · 1998 to 2012
$3.3M
LIPID MODULATION OF RHODOPSIN SIGNALING IN MEMBRANESR01EY018891 · NEI · UNIVERSITY OF ARIZONA · PI BROWN, MICHAEL F · 2008 to 2010
$1.1M
MEMBRANE BASIS OF VISUAL EXCITATIONR01EY026041 · NEI · UNIVERSITY OF ARIZONA · PI BROWN, MICHAEL F · 2016 to 2018
$1.1M
NEI NIH HHS R01 EY012049NEI NIH HHS R01 EY018891NEI NIH HHS R01 EY026041
6 · The paper itself

Abstract

Light activation of the visual G-protein-coupled receptor (GPCR) rhodopsin leads to significant structural fluctuations of the protein embedded within the membrane yielding the activation of cognate G-protein (transducin), which initiates biological signaling. Here, we report a quasi-elastic neutron scattering study of the activation of rhodopsin as a GPCR prototype. Our results reveal a broadly distributed relaxation of hydrogen atom dynamics of rhodopsin on a picosecond-nanosecond time scale, crucial for protein function, as only observed for globular proteins previously. Interestingly, the results suggest significant differences in the intrinsic protein dynamics of the dark-state rhodopsin versus the ligand-free apoprotein, opsin. These differences can be attributed to the influence of the covalently bound retinal ligand. Furthermore, an idea of the generic free-energy landscape is used to explain the GPCR dynamics of ligand-binding and ligand-free protein conformations, which can be further applied to other GPCR systems.

Identifiers

PMID27628201
PMCPMC5378701
OpenAlexW2520467172

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.