Evidence map›Paper›PMID 27626406›Full record

ArticleInternational journal of molecular sciences2016

Small GTPases and Stress Responses of vvran1 in the Straw Mushroom Volvariella volvacea.

Jun-Jie Yan, Bin Xie, Lei Zhang, Shao-Jie Li, Arend F van Peer, Ta-Ju Wu, Bing-Zhi Chen, Bao-Gui Xie

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. The NADPH oxidase in Volvariella volvacea and its differential expression in response to mycelial ageing and mechanical injury.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Review
  5. Mushrooms: from nutrition to mycoremediation.Environmental science and pollution research international · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jun-Jie YanMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. junjie017@163.com.
Bin XieMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. 18705043595@163.com.
Lei ZhangMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. zhanglei311540@163.com.
Shao-Jie LiState Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, China. lisj@im.ac.cn.
Arend F van PeerMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. arendvanpeer@gmail.com.
Ta-Ju WuState Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, China. wutaju@163.com.
Bing-Zhi ChenMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. cbz_2006@163.com.
Bao-Gui XieMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. mrcfafu@163.com.
Fujian Agriculture and Forestry University · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Small GTPases play important roles in the growth, development and environmental responses of eukaryotes. Based on the genomic sequence of the straw mushroom Volvariella volvacea, 44 small GTPases were identified. A clustering analysis using human small GTPases as the references revealed that V. volvacea small GTPases can be grouped into five families: nine are in the Ras family, 10 are in the Rho family, 15 are in the Rab family, one is in the Ran family and nine are in the Arf family. The transcription of vvran1 was up-regulated upon hydrogen peroxide (H₂O₂) stress, and could be repressed by diphenyleneiodonium chloride (DPI), a NADPH oxidase-specific inhibitor. The number of vvran1 transcripts also increased upon cold stress. Diphenyleneiodonium chloride, but not the superoxide dismutase (SOD) inhibitor diethy dithiocarbamate (DDC), could suppress the up-regulation of vvran1 gene expression to cold stress. These results combined with the high correlations between gene expression and superoxide anion (O₂(-)) generation indicated that vvran1 could be one of the candidate genes in the downstream of O₂(-) mediated pathways that are generated by NADPH oxidase under low temperature and oxidative stresses.

Indexed as

Stress, PhysiologicalCold TemperatureFungal ProteinsGene Expression Regulation, EnzymologicGene Expression Regulation, FungalHumansHydrogen PeroxideMonomeric GTP-Binding ProteinsMultigene FamilyOnium CompoundsPhylogenyran GTP-Binding ProteinSequence Analysis, DNASequence Homology, Amino AcidVolvarielladiphenyleneiodoniumFungal ProteinsHydrogen PeroxideMonomeric GTP-Binding ProteinsOnium Compoundsran GTP-Binding Proteinabiotic stressesedible fungiRT-qPCRsmall GTPase superfamilysuperoxide anion

Identifiers

PMID27626406
PMCPMC5037802
OpenAlexW2520988460

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.