ArticleFrontiers in plant science2016
Construction of a High-Density Genetic Map Based on Large-Scale Marker Development in Mango Using Specific-Locus Amplified Fragment Sequencing (SLAF-seq).
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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31 citing papers in PubMed.
- Integrative genomics for mango genetics and breeding.Horticulture research · 2026Article
- Mango mesocarp fibers are a continuum of fibrous endocarp structures that are co-lignified during seed coat hardening.Frontiers in plant science · 2026Article
- GWAS identifies a polyembryony locus in mango: development of KASP and PACE markers for marker-assisted breeding.Frontiers in plant science · 2025Article
- Genomic diversity, population structure, and genome-wide association reveal genetic differentiation and trait improvements in mango.Horticulture research · 2024Article
- Construction of a high-density genetic map based on large-scale marker development in Coix lacryma-jobi L. using specific-locus amplified fragment sequencing (slaf-seq).Scientific reports · 2024Article
- Population structure and genetic diversity of mango (Frontiers in plant science · 2024Article
- Promoter insertion leads to polyembryony in mango - a case of convergent evolution with citrus.Horticulture research · 2023Article
- Advances in sequencing and key character analysis of mango (Horticulture research · 2023Article
- Differential effects of low and high temperature stress on pollen germination and tube length of mango (Mangifera indica L.) genotypes.Scientific reports · 2023Article
- High resolution mapping of QTLs for fruit color and firmness in Amrapali/Sensation mango hybrids.Frontiers in plant science · 2023Article
- TeaPVs: a comprehensive genomic variation database for tea plant (Camellia sinensis).BMC plant biology · 2022Article
- QTL mapping for growth-related traits by constructing the first genetic linkage map in Simao pine.BMC plant biology · 2022Article
- Genomic Approaches for Improvement of Tropical Fruits: Fruit Quality, Shelf Life and Nutrient Content.Genes · 2021Review
- The 'Tommy Atkins' mango genome reveals candidate genes for fruit quality.BMC plant biology · 2021Article
- Identification of fruit size associated quantitative trait loci featuring SLAF based high-density linkage map of goji berry (Lycium spp.).BMC plant biology · 2020Article
- Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations.BMC genomics · 2020Article
- The genome evolution and domestication of tropical fruit mango.Genome biology · 2020Article
- High-density genetic map construction and identification of loci controlling flower-type traits in Chrysanthemum (Horticulture research · 2020Article
- Genetic Mapping of Prince Rupprecht's Larch (Genes · 2019Article
- Genetic diversity and relatedness of mango cultivars assessed by SSR markers.Breeding science · 2019Article
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6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Genetic maps are particularly important and valuable tools for quantitative trait locus (QTL) mapping and marker assisted selection (MAS) of plant with desirable traits. In this study, 173 F1 plants from a cross between Mangifera indica L. "Jin-Hwang" and M. indica L. "Irwin" and their parent plants were subjected to high-throughput sequencing and specific-locus amplified fragment (SLAF) library construction. After preprocessing, 66.02 Gb of raw data containing 330.64 M reads were obtained. A total of 318,414 SLAFs were detected, of which 156,368 were polymorphic. Finally, 6594 SLAFs were organized into a linkage map consisting of 20 linkage groups (LGs). The total length of the map was 3148.28 cM and the average distance between adjacent markers was 0.48 cM. This map could be considered, to our knowledge, the first high-density genetic map of mango, and might form the basis for fine QTL mapping and MAS of mango.
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