Evidence map›Paper›PMID 27625634›Full record

ArticleFrontiers in microbiology2016

Metagenomic and PCR-Based Diversity Surveys of [FeFe]-Hydrogenases Combined with Isolation of Alkaliphilic Hydrogen-Producing Bacteria from the Serpentinite-Hosted Prony Hydrothermal Field, New Caledonia.

Nan Mei, Anne Postec, Christophe Monnin, Bernard Pelletier, Claude E Payri, Bénédicte Ménez, Eléonore Frouin, Bernard Ollivier, Gaël Erauso, Marianne Quéméneur

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  9. Formation and loss of metastable brucite: does Fe(II)-bearing brucite support microbial activity in serpentinizing ecosystems?Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2020
    Article
  10. Review
  11. Review
  12. Article
  13. Genomic andFrontiers in microbiology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Nan MeiAix Marseille Univ, Université de Toulon, CNRS, IRD, MIO Marseille, France.
Anne PostecAix Marseille Univ, Université de Toulon, CNRS, IRD, MIO Marseille, France.
Christophe MonninGET UMR5563 (Centre National de la Recherche Scientifique/UPS/IRD/CNES), Géosciences Environnement Toulouse Toulouse, France.
Bernard PelletierInstitut pour la Recherche et le Développement (IRD) Centre de Nouméa, MIO UM 110 Nouméa, Nouvelle-Calédonie.
Claude E PayriInstitut pour la Recherche et le Développement (IRD) Centre de Nouméa, MIO UM 110 Nouméa, Nouvelle-Calédonie.
Bénédicte MénezInstitut de Physique du Globe de Paris, Sorbonne Paris Cité, Univ Paris Diderot, Centre National de la Recherche Scientifique Paris, France.
Eléonore FrouinAix Marseille Univ, Université de Toulon, CNRS, IRD, MIO Marseille, France.
Bernard OllivierAix Marseille Univ, Université de Toulon, CNRS, IRD, MIO Marseille, France.
Gaël ErausoAix Marseille Univ, Université de Toulon, CNRS, IRD, MIO Marseille, France.
Marianne QuéméneurAix Marseille Univ, Université de Toulon, CNRS, IRD, MIO Marseille, France.
Institut de Recherche pour le Développement · FRInstitut de Recherche pour le Développement · NCUniversité de Toulon · FRCentre National de la Recherche Scientifique · FRUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High amounts of hydrogen are emitted in the serpentinite-hosted hydrothermal field of the Prony Bay (PHF, New Caledonia), where high-pH (~11), low-temperature (< 40°C), and low-salinity fluids are discharged in both intertidal and shallow submarine environments. In this study, we investigated the diversity and distribution of potentially hydrogen-producing bacteria in Prony hyperalkaline springs by using metagenomic analyses and different PCR-amplified DNA sequencing methods. The retrieved sequences of hydA genes, encoding the catalytic subunit of [FeFe]-hydrogenases and, used as a molecular marker of hydrogen-producing bacteria, were mainly related to those of Firmicutes and clustered into two distinct groups depending on sampling locations. Intertidal samples were dominated by new hydA sequences related to uncultured Firmicutes retrieved from paddy soils, while submarine samples were dominated by diverse hydA sequences affiliated with anaerobic and/or thermophilic submarine Firmicutes pertaining to the orders Thermoanaerobacterales or Clostridiales. The novelty and diversity of these [FeFe]-hydrogenases may reflect the unique environmental conditions prevailing in the PHF (i.e., high-pH, low-salt, mesothermic fluids). In addition, novel alkaliphilic hydrogen-producing Firmicutes (Clostridiales and Bacillales) were successfully isolated from both intertidal and submarine PHF chimney samples. Both molecular and cultivation-based data demonstrated the ability of Firmicutes originating from serpentinite-hosted environments to produce hydrogen by fermentation, potentially contributing to the molecular hydrogen balance in situ.

Indexed as

[FeFe]-hydrogenasehydA geneshydrogenhydrogen producersmetagenomicsmicrobial diversityserpentinization

Identifiers

PMID27625634
PMCPMC5003875
OpenAlexW2511554307

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.