Evidence map›Paper›PMID 27623961›Full record

ArticleVirology journal2016

Continuous detection and genetic diversity of human rotavirus A in sewage in eastern China, 2013-2014.

Nan Zhou, Dong Lv, Suting Wang, Xiaojuan Lin, Zhenwang Bi, Haiyan Wang, Pei Wang, Huaning Zhang, Zexin Tao, Peibin Hou and 2 more

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 2 pooled it
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 2 syntheses or guidelines pooled it, 38 citations in OpenAlex.

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  8. Detection and evaluation of rotavirus surveillance methods as viral indicator in the aquatic environments.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Nan ZhouSchool of Public Health, Shandong University, Jinan, 250012, China.
Dong LvThe 456th Hospital of PLA, Jinan, 250031, China.
Suting WangAcademy of Preventive Medicine, Shandong University, Jinan, 250014, China.
Xiaojuan LinAcademy of Preventive Medicine, Shandong University, Jinan, 250014, China.
Zhenwang BiAcademy of Preventive Medicine, Shandong University, Jinan, 250014, China.
Haiyan WangAcademy of Preventive Medicine, Shandong University, Jinan, 250014, China.
Pei WangSchool of Public Health, Shandong University, Jinan, 250012, China.
Huaning ZhangAcademy of Preventive Medicine, Shandong University, Jinan, 250014, China.
Zexin TaoAcademy of Preventive Medicine, Shandong University, Jinan, 250014, China.
Peibin HouAcademy of Preventive Medicine, Shandong University, Jinan, 250014, China.
Yanyan SongSchool of Public Health, Shandong University, Jinan, 250012, China.
Aiqiang XuSchool of Public Health, Shandong University, Jinan, 250012, China. aqxuepi@163.com.
Shandong University · CN82th Hospital of Pla · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRotavirus is the leading viral agent for pediatric gastroenteritis. However, the case-based surveillance for rotavirus is limited in China, and its circulation in the environment is not well investigated.

methodsFrom 2013 to 2014, rotavirus was detected in raw sewage samples of Jinan and Linyi by quantitative PCR (qPCR) and conventional reverse transcription PCR (RT-PCR). After sequenced and genotyped, sequences analysis was conducted.

resultsA total of 46 sewage samples were collected monthly for the detection of rotavirus, and rotavirus was positive in 43 samples (93.5 %, 43/46). By quantitative assessment, the concentrations of rotavirus in raw sewage ranged from 4.1 × 10(3) to 1.3 × 10(6) genome copies (GC)/L in Jinan, and from 1.5 × 10(3) to 3.0 × 10(5) GC/L in Linyi. A total of 318 sequences of 5 G-genotypes and 318 sequences of 5 P-genotypes were obtained. G9 (91.8 %, 292/318) and P[8] (56.0 %, 178/318) were the most common G- and P-genotype, respectively. Multiple transmission lineages were recognized in these genotypes. Interestingly, an intragenic recombination event between two G9 lineages was observed.

conclusionsThis study provided the first report of comprehensive environmental surveillance for rotavirus in China. The results suggest that the concentration of rotavirus in raw sewage was high, and multiple rotavirus transmission lineages continuously co-circulated in Shandong.

Indexed as

Genetic VariationChinaEpidemiological MonitoringGenotypeHumansReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRotavirusSequence Analysis, DNASewageViral LoadSewageChinaMolecular epidemiologyQuantificationRotavirusSewage

Identifiers

PMID27623961
PMCPMC5022235
OpenAlexW2520525959

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.