ArticleBMC bioinformatics2016
BmncRNAdb: a comprehensive database of non-coding RNAs in the silkworm, Bombyx mori.
Article in BMC bioinformatics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 50 citations in OpenAlex.
- Characterization of full-length long noncoding RNAs and identification of virus-responsive lncRNAs inFrontiers in microbiology · 2025Article
- Identification and analysis of short-term and long-term salt-associated lncRNAs in the leaf of Avicennia marina.BMC plant biology · 2024Article
- Genome-Wide Exploration of Long Non-Coding RNAs ofInsects · 2024Article
- Transcriptomic Analysis ofInternational journal of molecular sciences · 2023Article
- Non-coding RNAs identification and regulatory networks in pathogen-host interaction in the microsporidia congenital infection.BMC genomics · 2023Article
- Recent Advances and Future Potential of Long Non-Coding RNAs in Insects.International journal of molecular sciences · 2023Review
- Enthralling genetic regulatory mechanisms meddling insecticide resistance development in insects: role of transcriptional and post-transcriptional events.Frontiers in molecular biosciences · 2023Review
- Article
- Long Non-Coding RNAInsects · 2022Article
- Transcriptome analysis reveals potential function of long non-coding RNAs in 20-hydroxyecdysone regulated autophagy in Bombyx mori.BMC genomics · 2021Article
- PlncRNA-HDeep: plant long noncoding RNA prediction using hybrid deep learning based on two encoding styles.BMC bioinformatics · 2021Article
- The Landscapes of Full-Length Transcripts and Splice Isoforms as Well as Transposons Exonization in the Lepidopteran Model System,Frontiers in genetics · 2021Article
- SilkDB 3.0: visualizing and exploring multiple levels of data for silkworm.Nucleic acids research · 2020Article
- Genome-Wide Identification of Long Non-Coding RNAs and Their Regulatory Networks Involved inInsects · 2019Article
- Gene Expression Pattern and Regulatory Network ofInternational journal of genomics · 2019Article
- De novo transcriptome assembly for the spiny mouse (Acomys cahirinus).Scientific reports · 2017Article
- Long Non-Coding RNAs Regulating Immunity in Insects.Non-coding RNA · 2017Review
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundLong non-coding RNAs (lncRNAs) may play critical roles in a wide range of developmental processes of higher organisms. Recently, lncRNAs have been widely identified across eukaryotes and many databases of lncRNAs have been developed for human, mouse, fruit fly, etc. However, there is rare information about them in the only completely domesticated insect, silkworm (Bombyx mori). DESCRIPTION: In this study, we systematically scanned lncRNAs using the available silkworm RNA-seq data and public unigenes. Finally, we identified and collected 6281 lncRNAs in the silkworm. Besides, we also collected 1986 microRNAs (miRNAs) from previous studies. Then, we organized them into a comprehensive and web-based database, BmncRNAdb. This database offers a user-friendly interface for data browse and online analysis as well as the three online tools for users to predict the target genes of lncRNA or miRNA.
conclusionsWe have systematically identified and collected the silkworm lncRNAs and constructed a comprehensive database of the silkworm lncRNAs and miRNAs. This work gives a glimpse into lncRNAs of the silkworm and lays foundations for the ncRNAs study of the silkworm and other insects in the future. The BmncRNAdb is freely available at http://gene.cqu.edu.cn/BmncRNAdb/index.php .
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.