ArticleScientific reports2016
Development of a SNP array and its application to genetic mapping and diversity assessment in pepper (Capsicum spp.).
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- Genetic Diversity and Core Collection Construction ofPlants (Basel, Switzerland) · 2026Article
- Challenges and solutions in hand pollination for hybrid pepper (Capsicum annuum L.) seed production: a review.Planta · 2026Review
- Integrated high-density genetic maps in multi-parent FBMC plant biology · 2026Article
- QTL mapping and identification of linked markers for anthracnose fruit rot resistance inFrontiers in plant science · 2026Article
- Genome-Wide Association Analysis of Sweet Pepper (Plants (Basel, Switzerland) · 2025Article
- Chloroplast genome characteristic, comparative and phylogenetic analyses in Capsicum (Solanaceae).BMC genomics · 2024Article
- Exploring Genomic Regions Associated with Fruit Traits in Pepper: Insights from Multiple GWAS Models.International journal of molecular sciences · 2024Article
- Development of a 45K pepper GBTS liquid-phase gene chip and its application in genome-wide association studies.Frontiers in plant science · 2024Article
- Revitalizing agriculture: next-generation genotyping and -omics technologies enabling molecular prediction of resilient traits in the Solanaceae family.Frontiers in plant science · 2024Review
- Genetic diversity, population structure, and phylogeny of insular Spanish pepper landraces (Frontiers in plant science · 2024Article
- Analysis of codon usage patterns in 48 Aconitum species.BMC genomics · 2023Article
- Fine mapping and gene silencing pinpoint Capana10g002229 as a strong candidate gene regulating the deciduous character of ripe pepper fruit (Capsicum spp.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Genetic diversity between local landraces and current breeding lines of pepper in China.Scientific reports · 2023Article
- Construction of a high-density genetic map for faba bean (Frontiers in plant science · 2023Article
- Article
- Challenges in quantifying genome erosion for conservation.Frontiers in genetics · 2022Review
- Fine mapping and candidate gene analysis of the up locus determining fruit orientation in pepper (Capsicum spp.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Single nucleotide polymorphisms reveal genetic diversity in New Mexican chile peppers (Capsicum spp.).BMC genomics · 2021Article
- Fine Mapping and Candidate Gene Identification for theFrontiers in plant science · 2021Article
- Reproductive compatibility in Capsicum is not necessarily reflected in genetic or phenotypic similarity between species complexes.PloS one · 2021Article
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Authors and funding
11 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The development and application of single nucleotide polymorphisms (SNPs) is in its infancy for pepper. Here, a set of 15,000 SNPs were chosen from the resequencing data to develop an array for pepper with 12,720 loci being ultimately synthesized. Of these, 8,199 (~64.46%) SNPs were found to be scorable and covered ~81.18% of the whole genome. With this array, a high-density interspecific genetic map with 5,569 SNPs was constructed using 297 F2 individuals, and genetic diversity of a panel of 399 pepper elite/landrace lines was successfully characterized. Based on the genetic map, one major QTL, named Up12.1, was detected for the fruit orientation trait. A total of 65 protein-coding genes were predicted within this QTL region based on the current annotation of the Zunla-1 genome. In summary, the thousands of well-validated SNP markers, high-density genetic map and genetic diversity information will be useful for molecular genetics and innovative breeding in pepper. Furthermore, the mapping results lay foundation for isolating the genes underlying variation in fruit orientation of Capsicum.
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