Evidence map›Paper›PMID 27623010›Full record

ArticleeLife2016

Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes.

Yehudit Hasin-Brumshtein, Arshad H Khan, Farhad Hormozdiari, Calvin Pan, Brian W Parks, Vladislav A Petyuk, Paul D Piehowski, Anneke Brümmer, Matteo Pellegrini, Xinshu Xiao and 4 more

Abstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Hybrids reveal accessible chromatinbioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Where Are the Disease-Associated eQTLs?Trends in genetics : TIG · 2021
    Review
  15. Article
  16. Article
  17. Article
  18. The GeneG3 (Bethesda, Md.) · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yehudit Hasin-BrumshteinDepartment of Human Genetics, University of California, Los Angeles, Los Angeles, United States.ORCID 0000-0001-7528-603X
Arshad H KhanDepartment of Molecular and Medical Pharmacology, University of California, Los Angeles, Los Angeles, United States.
Farhad HormozdiariDepartment of Computer Science, University of California, Los Angeles, Los Angeles, United States.
Calvin PanDepartment of Human Genetics, University of California, Los Angeles, Los Angeles, United States.
Brian W ParksDepartment of Human Genetics, University of California, Los Angeles, Los Angeles, United States.
Vladislav A PetyukBiological Sciences Division, Pacific Northwest National Laboratory, Richland, United States.
Paul D PiehowskiBiological Sciences Division, Pacific Northwest National Laboratory, Richland, United States.
Anneke BrümmerDepartment of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, United States.
Matteo PellegriniDepartment of Molecular, Cell, and Developmental Biology, University of California, Los Angeles, Los Angeles, United States.
Xinshu XiaoDepartment of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, United States.
Eleazar EskinDepartment of Computer Science, University of California, Los Angeles, Los Angeles, United States.
Richard D SmithBiological Sciences Division, Pacific Northwest National Laboratory, Richland, United States.
Aldons J LusisDepartment of Human Genetics, University of California, Los Angeles, Los Angeles, United States.
Desmond J SmithDepartment of Molecular and Medical Pharmacology, University of California, Los Angeles, Los Angeles, United States.

Funding

Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
Deep RNA sequencing and proteomic analysis of a hybrid mouse diversity panelR01GM098273 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SMITH, DESMOND JAMES · 2012 to 2015
$1.6M
Functional genetic variations in splicing regulationR01HG006264 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI XIAO, XINSHU GRACE · 2012 to 2016
$1.5M
Systems Genetics Analysis of Gene-by-Environment Interactions in ObesityR00HL123021 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI PARKS, BRIAN WESLEY · 2016 to 2018
$747k
NHGRI NIH HHS R01 HG006264NHLBI NIH HHS R00 HL123021NIGMS NIH HHS P41 GM103493NIGMS NIH HHS R01 GM098273
6 · The paper itself

Abstract

Previous studies had shown that the integration of genome wide expression profiles, in metabolic tissues, with genetic and phenotypic variance, provided valuable insight into the underlying molecular mechanisms. We used RNA-Seq to characterize hypothalamic transcriptome in 99 inbred strains of mice from the Hybrid Mouse Diversity Panel (HMDP), a reference resource population for cardiovascular and metabolic traits. We report numerous novel transcripts supported by proteomic analyses, as well as novel non coding RNAs. High resolution genetic mapping of transcript levels in HMDP, reveals both

Indexed as

Quantitative Trait LociTranscriptomeAlternative SplicingAnimalsCardiovascular DiseasesChromosome MappingGenetic Association StudiesHypothalamusMetabolic DiseasesMiceProteomeRNA, UntranslatedSequence Analysis, RNAProteomeRNA, UntranslatedeQTLevolutionary biologygenomicshigh fat diethypothalamusmouseneuroscienceobesityRNA-Seqtrans-eQTL

Identifiers

PMID27623010
PMCPMC5053804

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.