Evidence map›Paper›PMID 27621473›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Molecular determinants of cadherin ideal bond formation: Conformation-dependent unbinding on a multidimensional landscape.

Kristine Manibog, Kannan Sankar, Sun-Ae Kim, Yunxiang Zhang, Robert L Jernigan, Sanjeevi Sivasankar

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  5. Engineering the Interactions of Classical Cadherin Cell-Cell Adhesion Proteins.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Molecular mechanism for strengthening E-cadherin adhesion using a monoclonal antibody.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Inside-out regulation of E-cadherin conformation and adhesion.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Review
  17. Article
  18. Single-molecule studies of classical and desmosomal cadherin adhesion.Current opinion in biomedical engineering · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Kristine ManibogDepartment of Physics and Astronomy, Iowa State University, Ames, IA 50011; Ames Laboratory, US Department of Energy, Ames, IA 50011;
Kannan SankarBioinformatics and Computational Biology Interdepartmental Program, Iowa State University, Ames, IA 50011; Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA 50011;
Sun-Ae KimDepartment of Physics and Astronomy, Iowa State University, Ames, IA 50011; Ames Laboratory, US Department of Energy, Ames, IA 50011;
Yunxiang ZhangDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305;
Robert L JerniganDepartment of Physics and Astronomy, Iowa State University, Ames, IA 50011; Bioinformatics and Computational Biology Interdepartmental Program, Iowa State University, Ames, IA 50011; Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA 50011; L. H. Baker Center for Bioinformatics and Computational Biology, Iowa State University, Ames, IA 50011.
Sanjeevi SivasankarDepartment of Physics and Astronomy, Iowa State University, Ames, IA 50011; Ames Laboratory, US Department of Energy, Ames, IA 50011; sivasank@iastate.edu.
Iowa State University · USAmes National Laboratory · USStanford University · US

Funding

Coarse-Grained Models of ProteinsR01GM072014 · NIGMS · IOWA STATE UNIVERSITY · PI JERNIGAN, ROBERT L · 2004 to 2012
$2.3M
NIGMS NIH HHS R01 GM072014
6 · The paper itself

Abstract

Classical cadherin cell-cell adhesion proteins are essential for the formation and maintenance of tissue structures; their primary function is to physically couple neighboring cells and withstand mechanical force. Cadherins from opposing cells bind in two distinct trans conformations: strand-swap dimers and X-dimers. As cadherins convert between these conformations, they form ideal bonds (i.e., adhesive interactions that are insensitive to force). However, the biophysical mechanism for ideal bond formation is unknown. Here, we integrate single-molecule force measurements with coarse-grained and atomistic simulations to resolve the mechanistic basis for cadherin ideal bond formation. Using simulations, we predict the energy landscape for cadherin adhesion, the transition pathways for interconversion between X-dimers and strand-swap dimers, and the cadherin structures that form ideal bonds. Based on these predictions, we engineer cadherin mutants that promote or inhibit ideal bond formation and measure their force-dependent kinetics using single-molecule force-clamp measurements with an atomic force microscope. Our data establish that cadherins adopt an intermediate conformation as they shuttle between X-dimers and strand-swap dimers; pulling on this conformation induces a torsional motion perpendicular to the pulling direction that unbinds the proteins and forms force-independent ideal bonds. Torsional motion is blocked when cadherins associate laterally in a cis orientation, suggesting that ideal bonds may play a role in mechanically regulating cadherin clustering on cell surfaces.

Indexed as

CadherinsMolecular Dynamics SimulationMutant ProteinsPrincipal Component AnalysisProtein BindingProtein ConformationProtein MultimerizationThermodynamicsCadherinsMutant ProteinsAFMcell adhesionmechanobiologysimulationssingle-molecule biophysics

Identifiers

PMID27621473
PMCPMC5047164
OpenAlexW2520469250

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.