Evidence map›Paper›PMID 27621468›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Humanized H19/Igf2 locus reveals diverged imprinting mechanism between mouse and human and reflects Silver-Russell syndrome phenotypes.

Stella K Hur, Andrea Freschi, Folami Ideraabdullah, Joanne L Thorvaldsen, Lacey J Luense, Angela H Weller, Shelley L Berger, Flavia Cerrato, Andrea Riccio, Marisa S Bartolomei

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  5. Long noncoding RNA (lncRNA)Genes & diseases · 2023
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  6. DysregulatedeLife · 2022
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  10. Reports of biochemistry & molecular biology · 2020
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Is ZFP57 binding toClinical epigenetics · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Stella K HurDepartment of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104;
Andrea FreschiDepartment of Environmental, Biological, and Pharmaceutical Sciences and Technologies, Second University of Naples, 81100 Caserta, Italy;
Folami IderaabdullahDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599;
Joanne L ThorvaldsenDepartment of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104;
Lacey J LuenseDepartment of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104;
Angela H WellerDepartment of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104;
Shelley L BergerDepartment of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104;
Flavia CerratoDepartment of Environmental, Biological, and Pharmaceutical Sciences and Technologies, Second University of Naples, 81100 Caserta, Italy; flavia.cerrato@unina2.it andrea.riccio@igb.cnr.it bartolom@mail.med.upenn.edu.
Andrea RiccioDepartment of Environmental, Biological, and Pharmaceutical Sciences and Technologies, Second University of Naples, 81100 Caserta, Italy; Institute of Genetics and Biophysics A. Buzzati-Traverso, 80131 Naples, Italy flavia.cerrato@unina2.it andrea.riccio@igb.cnr.it bartolom@mail.med.upenn.edu.
Marisa S BartolomeiDepartment of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104; flavia.cerrato@unina2.it andrea.riccio@igb.cnr.it bartolom@mail.med.upenn.edu.
University of Pennsylvania · USUniversity of Campania "Luigi Vanvitelli" · ITInstitute of Genetics and Biophysics · ITUniversity of North Carolina at Chapel Hill · US

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
Research Project 4: Epigenetic Regulation of Retrotransposon Silencing and Male Fertility in the MouseP50HD068157 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI Suneeta Senapati · 2014 to 2026
$16.3M
TRAINING PROGRAM IN CELL AND MOLECULAR BIOLOGYT32GM007229 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 1985 to 2023
$14.0M
SEQUENCES CONTROLLING H19 GENE IMPRINTINGR01GM051279 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 1994 to 2024
$5.1M
PROJECT 4: TARGETING ADP-RIBOSE POLYMER DEPENDENT EPIGENETIC EVENTS IN MALE LINEU54HD068157 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 2011 to 2013
$4.8M
Sequences controlling H19 Gene ImprintingR37GM051279 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 2011 to 2020
$3.9M
A genetic approach to understanding mechanisms of epigenetic perturbation by environmentK22ES023849 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI IDERAABDULLAH, FOLAMI · 2015 to 2017
$471k
Role of regulatory sequence at the H19 imprinting control regionF32GM085999 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI IDERAABDULLAH, FOLAMI · 2008 to 2009
$97k
NICHD NIH HHS P50 HD068157NICHD NIH HHS U54 HD068157NIEHS NIH HHS K22 ES023849NIEHS NIH HHS P30 ES013508NIGMS NIH HHS F32 GM085999NIGMS NIH HHS R01 GM051279NIGMS NIH HHS R37 GM051279NIGMS NIH HHS T32 GM007229Telethon GGP15131
6 · The paper itself

Abstract

Genomic imprinting affects a subset of genes in mammals, such that they are expressed in a monoallelic, parent-of-origin-specific manner. These genes are regulated by imprinting control regions (ICRs), cis-regulatory elements that exhibit allele-specific differential DNA methylation. Although genomic imprinting is conserved in mammals, ICRs are genetically divergent across species. This raises the fundamental question of whether the ICR plays a species-specific role in regulating imprinting at a given locus. We addressed this question at the H19/insulin-like growth factor 2 (Igf2) imprinted locus, the misregulation of which is associated with the human imprinting disorders Beckwith-Wiedemann syndrome (BWS) and Silver-Russell syndrome (SRS). We generated a knock-in mouse in which the endogenous H19/Igf2 ICR (mIC1) is replaced by the orthologous human ICR (hIC1) sequence, designated H19(hIC1) We show that hIC1 can functionally replace mIC1 on the maternal allele. In contrast, paternally transmitted hIC1 leads to growth restriction, abnormal hIC1 methylation, and loss of H19 and Igf2 imprinted expression. Imprint establishment at hIC1 is impaired in the male germ line, which is associated with an abnormal composition of histone posttranslational modifications compared with mIC1. Overall, this study reveals evolutionarily divergent paternal imprinting at IC1 between mice and humans. The conserved maternal imprinting mechanism and function at IC1 demonstrates the possibility of modeling maternal transmission of hIC1 mutations associated with BWS in mice. In addition, we propose that further analyses in the paternal knock-in H19(+/hIC1) mice will elucidate the molecular mechanisms that may underlie SRS.

Indexed as

Genomic ImprintingAllelesAnimalsDNA MethylationEmbryo, MammalianFemaleGene TargetingGenetic LociHistonesHumansInsulin-Like Growth Factor IILysineMaleMice, Inbred C57BLPhenotypeRNA, Long NoncodingH19 long non-coding RNAHistonesInsulin-Like Growth Factor IILysineRNA, Long NoncodingDNA methylationgenomic imprintingH19IGF2Silver–Russell syndrome

Identifiers

PMID27621468
PMCPMC5047210
OpenAlexW2519846458

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.