Evidence map›Paper›PMID 27621377›Full record

ArticleG3 (Bethesda, Md.)2016

First Draft Assembly and Annotation of the Genome of a California Endemic Oak

Victoria L Sork, Sorel T Fitz-Gibbon, Daniela Puiu, Marc Crepeau, Paul F Gugger, Rachel Sherman, Kristian Stevens, Charles H Langley, Matteo Pellegrini, Steven L Salzberg

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
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  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. A first draft genome of holm oak (Frontiers in molecular biosciences · 2023
    Article
  14. A chromosome-scale genome assembly ofFrontiers in plant science · 2023
    Article
  15. Review
  16. Article
  17. Multiomics Molecular Research into the Recalcitrant and OrphanInternational journal of molecular sciences · 2022
    Review
  18. Article
  19. Article
  20. Chromosome-level genome assembly and characterization of Sophora Japonica.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Victoria L SorkDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, California 90095 vlsork@ucla.edu.
Sorel T Fitz-GibbonInstitute of Genomics and Proteomics, University of California, Los Angeles, California 90095.
Daniela PuiuCenter for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205.
Marc CrepeauDepartment of Evolution and Ecology, University of California, Davis, California 95616.
Paul F GuggerDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, California 90095.ORCID http://orcid.org/0000-0002-4464-8453
Rachel ShermanDepartment of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218.
Kristian StevensDepartment of Evolution and Ecology, University of California, Davis, California 95616.
Charles H LangleyDepartment of Evolution and Ecology, University of California, Davis, California 95616.
Matteo PellegriniDepartment of Molecular, Cell, and Developmental Biology, University of California, Los Angeles, California 90095.
Steven L SalzbergDepartment of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218.ORCID http://orcid.org/0000-0002-8859-743

Funding

Computational Methods for Genome Assembly, Transcript Assembly, and Variant DiscoveryR01HG006677 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI SALZBERG, STEVEN L. · 2011 to 2025
$10.7M
NHGRI NIH HHS R01 HG006677
6 · The paper itself

Abstract

Oak represents a valuable natural resource across Northern Hemisphere ecosystems, attracting a large research community studying its genetics, ecology, conservation, and management. Here we introduce a draft genome assembly of valley oak (

Indexed as

adaptationannotationchloroplastGenomic SelectionGenPrednuclear genome assemblyQuercusShared Data Resources

Identifiers

PMID27621377
PMCPMC5100847

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.