Evidence map›Paper›PMID 27620731›Full record

ArticleAMB Express2016

Multi-trait QTL analysis for agronomic and quality characters of Agaricus bisporus (button mushrooms).

Wei Gao, Johan J P Baars, Chris Maliepaard, Richard G F Visser, Jinxia Zhang, Anton S M Sonnenberg

Abstract read
In one paragraph

Article in AMB Express, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. An Efficient CRISPR/Cas9 Genome Editing System for aJournal of fungi (Basel, Switzerland) · 2023
    Article
  4. Cultivation and Nutritional Evaluation ofFoods (Basel, Switzerland) · 2023
    Article
  5. Article
  6. Robust regression based genome-wide multi-trait QTL analysis.Molecular genetics and genomics : MGG · 2021
    Article
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Wei GaoWageningen UR Plant Breeding, Wageningen University & Research Centre, Droevendaalsestaag 1, 6700 AA, Wageningen, The Netherlands. gaowei01@caas.cn.ORCID http://orcid.org/0000-0002-5558-7588
Johan J P BaarsWageningen UR Plant Breeding, Wageningen University & Research Centre, Droevendaalsestaag 1, 6700 AA, Wageningen, The Netherlands.
Chris MaliepaardWageningen UR Plant Breeding, Wageningen University & Research Centre, Droevendaalsestaag 1, 6700 AA, Wageningen, The Netherlands.
Richard G F VisserWageningen UR Plant Breeding, Wageningen University & Research Centre, Droevendaalsestaag 1, 6700 AA, Wageningen, The Netherlands.
Jinxia ZhangInstitute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Zhongguancun South Street 12, Beijing, 100081, People's Republic of China.
Anton S M SonnenbergWageningen UR Plant Breeding, Wageningen University & Research Centre, Droevendaalsestaag 1, 6700 AA, Wageningen, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The demand for button mushrooms of high quality is increasing. Superior button mushroom varieties require the combination of multiple traits to maximize productivity and quality. Very often these traits are correlated and should, therefore, be evaluated together rather than as single traits. In order to unravel the genetic architecture of multiple traits of Agaricus bisporus and the genetic correlations among traits, we have investigated a total of six agronomic and quality traits through multi-trait QTL analyses in a mixed-model. Traits were evaluated in three heterokaryon sets. Significant phenotypic correlations were observed among traits. For instance, earliness (ER) correlated to firmness (FM), cap color, and compost colonization, and FM correlated to scales (SC). QTLs of different traits located on the same chromosomes genetically explains the phenotypic correlations. QTL detected on chromosome 10 mainly affects three traits, i.e., ER, FM and SC. It explained 31.4 % phenotypic variation of SC on mushroom cap (heterokaryon Set 1), 14.9 % that of the FM (heterokaryon Set 3), and 14.2 % that of ER (heterokaryon Set 3). High value alleles from the wild parental line showed beneficial effects for several traits, suggesting that the wild germplasm is a valuable donor in terms of those traits. Due to the limitations of recombination pattern, we only made a start at understanding the genetic base for several agronomic and quality traits in button mushrooms.

Indexed as

Genetic correlationsMulti-trait QTL analysisPhenotypic correlationsQTLs on the same chromosome

Identifiers

PMID27620731
PMCPMC5016490

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.