Evidence map›Paper›PMID 27618709›Full record

ArticlePLoS neglected tropical diseases2016

DenHunt - A Comprehensive Database of the Intricate Network of Dengue-Human Interactions.

Prashanthi Karyala, Rahul Metri, Christopher Bathula, Syam K Yelamanchi, Lipika Sahoo, Selvam Arjunan, Narayan P Sastri, Nagasuma Chandra

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Anti-dengue Potential of Mangiferin: Intricate Network of Dengue to Human Genes.Revista brasileira de farmacognosia : orgao oficial da Sociedade Brasileira de Farmacognosia · 2022
    Article
  10. Review
  11. Article
  12. Protein-protein interactions of human viruses.Seminars in cell & developmental biology · 2020
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Prashanthi KaryalaDepartment of Biochemistry, Center of Research and Post Graduate Studies, Indian Academy Degree College, Bengaluru, Karnataka, India.
Rahul MetriIISc Mathematics Initiative, Indian Institute of Science, Bengaluru, Karnataka, India.
Christopher BathulaDepartment of Biochemistry, Center of Research and Post Graduate Studies, Indian Academy Degree College, Bengaluru, Karnataka, India.
Syam K YelamanchiDepartment of Biochemistry, Center of Research and Post Graduate Studies, Indian Academy Degree College, Bengaluru, Karnataka, India.
Lipika SahooLifeIntelect Consultancy Pvt Ltd, Marathahalli, Bengaluru, Karnataka, India.
Selvam ArjunanDepartment of Biotechnology, Center of Research and Post Graduate Studies, Indian Academy Degree College, Bengaluru, Karnataka, India.
Narayan P SastriDepartment of Molecular Virology & Microbiology, Baylor College of Medicine, Houston, Texas, United States of America.
Nagasuma ChandraDepartment of Biochemistry, Indian Institute of Science, Bengaluru, Karnataka, India.
Indian Institute of Science Bangalore · INBaylor College of Medicine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dengue virus (DENV) is a human pathogen and its etiology has been widely established. There are many interactions between DENV and human proteins that have been reported in literature. However, no publicly accessible resource for efficiently retrieving the information is yet available. In this study, we mined all publicly available dengue-human interactions that have been reported in the literature into a database called DenHunt. We retrieved 682 direct interactions of human proteins with dengue viral components, 382 indirect interactions and 4120 differentially expressed human genes in dengue infected cell lines and patients. We have illustrated the importance of DenHunt by mapping the dengue-human interactions on to the host interactome and observed that the virus targets multiple host functional complexes of important cellular processes such as metabolism, immune system and signaling pathways suggesting a potential role of these interactions in viral pathogenesis. We also observed that 7 percent of the dengue virus interacting human proteins are also associated with other infectious and non-infectious diseases. Finally, the understanding that comes from such analyses could be used to design better strategies to counteract the diseases caused by dengue virus. The whole dataset has been catalogued in a searchable database, called DenHunt (http://proline.biochem.iisc.ernet.in/DenHunt/).

Indexed as

Databases as TopicHost-Pathogen InteractionsProtein Interaction MappingCell LineData MiningDatasets as TopicDengueDengue VirusHumansIndiaVirus Replication

Identifiers

PMID27618709
PMCPMC5019383
OpenAlexW2519110432

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.