Evidence map›Paper›PMID 27618685›Full record

ArticleNature plants2016

Evolution of an atypical de-epoxidase for photoprotection in the green lineage.

Zhirong Li, Graham Peers, Rachel M Dent, Yong Bai, Scarlett Y Yang, Wiebke Apel, Lauriebeth Leonelli, Krishna K Niyogi

Open access · greenAbstract read
In one paragraph

Article in Nature plants, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 68 citations in OpenAlex.

  1. Review
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  13. The Functions of Chloroplastic Ascorbate in Vascular Plants and Algae.International journal of molecular sciences · 2023
    Review
  14. Plant direct · 2023
    Article
  15. Frontiers in plant science · 2022
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zhirong LiDepartment of Plant and Microbial Biology, Howard Hughes Medical Institute, University of California, Berkeley, California 94720-3102, USA.
Graham PeersDepartment of Biology, Colorado State University, Fort Collins, Colorado 80523-1878, USA.ORCID 0000-0002-3590-7820
Rachel M DentDepartment of Plant and Microbial Biology, Howard Hughes Medical Institute, University of California, Berkeley, California 94720-3102, USA.
Yong BaiDepartment of Plant and Microbial Biology, Howard Hughes Medical Institute, University of California, Berkeley, California 94720-3102, USA.
Scarlett Y YangDepartment of Plant and Microbial Biology, Howard Hughes Medical Institute, University of California, Berkeley, California 94720-3102, USA.
Wiebke ApelDepartment of Plant and Microbial Biology, Howard Hughes Medical Institute, University of California, Berkeley, California 94720-3102, USA.
Lauriebeth LeonelliDepartment of Plant and Microbial Biology, Howard Hughes Medical Institute, University of California, Berkeley, California 94720-3102, USA.
Krishna K NiyogiDepartment of Plant and Microbial Biology, Howard Hughes Medical Institute, University of California, Berkeley, California 94720-3102, USA.
Howard Hughes Medical Institute · USColorado State University · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

Plants, algae and cyanobacteria need to regulate photosynthetic light harvesting in response to the constantly changing light environment. Rapid adjustments are required to maintain fitness because of a trade-off between efficient solar energy conversion and photoprotection. The xanthophyll cycle, in which the carotenoid pigment violaxanthin is reversibly converted into zeaxanthin, is ubiquitous among green algae and plants and is necessary for the regulation of light harvesting, protection from oxidative stress and adaptation to different light conditions(1,2). Violaxanthin de-epoxidase (VDE) is the key enzyme responsible for zeaxanthin synthesis from violaxanthin under excess light. Here we show that the Chlorophycean VDE (CVDE) gene from the model green alga Chlamydomonas reinhardtii encodes an atypical VDE. This protein is not homologous to the VDE found in plants and is instead related to a lycopene cyclase from photosynthetic bacteria(3). Unlike the plant-type VDE that is located in the thylakoid lumen, the Chlamydomonas CVDE protein is located on the stromal side of the thylakoid membrane. Phylogenetic analysis suggests that CVDE evolved from an ancient de-epoxidase that was present in the common ancestor of green algae and plants, providing evidence of unexpected diversity in photoprotection in the green lineage.

Indexed as

Evolution, MolecularPhotosynthesisBacterial ProteinsChlamydomonas reinhardtiiOxidoreductasesPhylogenyThylakoidsBacterial ProteinsOxidoreductasesviolaxanthin de-epoxidase

Identifiers

PMID27618685
PMCPMC5021192
OpenAlexW2519671479

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.