Evidence map›Paper›PMID 27617932›Full record

ArticleNature cell biology2016

Regional glutamine deficiency in tumours promotes dedifferentiation through inhibition of histone demethylation.

Min Pan, Michael A Reid, Xazmin H Lowman, Rajan P Kulkarni, Thai Q Tran, Xiaojing Liu, Ying Yang, Jenny E Hernandez-Davies, Kimberly K Rosales, Haiqing Li and 9 more

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 255 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
255citing papers in PubMed, 1 pooled it
15.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

255 citing papers in PubMed, 1 synthesis or guideline pooled it, 364 citations in OpenAlex.

  1. Pooled it
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  16. Epigenetic crosstalk in neuroblastoma development and progression.Frontiers in cell and developmental biology · 2026
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195 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 1 country.

Min PanDepartment of Cancer Biology, Beckman Research Institute of City of Hope Cancer Center, Duarte, California 91010, USA.
Michael A ReidDepartment of Cancer Biology, Beckman Research Institute of City of Hope Cancer Center, Duarte, California 91010, USA.
Xazmin H LowmanDepartment of Cancer Biology, Beckman Research Institute of City of Hope Cancer Center, Duarte, California 91010, USA.
Rajan P KulkarniDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125, USA.
Thai Q TranDepartment of Cancer Biology, Beckman Research Institute of City of Hope Cancer Center, Duarte, California 91010, USA.
Xiaojing LiuDepartment of Pharmacology and Cancer Biology, Duke University Medical School, Durham, North Carolina 27710, USA.
Ying YangDepartment of Cancer Biology, Beckman Research Institute of City of Hope Cancer Center, Duarte, California 91010, USA.
Jenny E Hernandez-DaviesDepartment of Cancer Biology, Beckman Research Institute of City of Hope Cancer Center, Duarte, California 91010, USA.
Kimberly K RosalesDepartment of Cancer Biology, Beckman Research Institute of City of Hope Cancer Center, Duarte, California 91010, USA.
Haiqing LiDepartment of Information Sciences, Beckman Research Institute of City of Hope Cancer Center, Duarte, California 91010, USA.
Willy HugoDivision of Dermatology, Department of Medicine, David Geffen School of Medicine and Jonsson Comprehensive Cancer Center, University of California Los Angeles, Los Angeles, California 90095, USA.ORCID 0000-0002-1426-7190
Chunying SongDivision of Dermatology, Department of Medicine, David Geffen School of Medicine and Jonsson Comprehensive Cancer Center, University of California Los Angeles, Los Angeles, California 90095, USA.
Xiangdong XuDepartment of Pathology, University of California San Diego, La Jolla, California 92093, USA.
Dustin E SchonesDepartment of Diabetes and Metabolic Disease, Beckman Research Institute of City of Hope Cancer Center, Duarte, California 91010, USA.
David K AnnDepartment of Diabetes and Metabolic Disease, Beckman Research Institute of City of Hope Cancer Center, Duarte, California 91010, USA.
Viviana GradinaruDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125, USA.ORCID 0000-0001-5868-348X
Roger S LoDivision of Dermatology, Department of Medicine, David Geffen School of Medicine and Jonsson Comprehensive Cancer Center, University of California Los Angeles, Los Angeles, California 90095, USA.
Jason W LocasaleDepartment of Pharmacology and Cancer Biology, Duke University Medical School, Durham, North Carolina 27710, USA.ORCID 0000-0002-7766-3502
Mei KongDepartment of Cancer Biology, Beckman Research Institute of City of Hope Cancer Center, Duarte, California 91010, USA.
City of Hope · USUniversity of California, Los Angeles · USCalifornia Institute of Technology · USDuke University · USUniversity of California San Diego · US

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
The Effect of Nanoparticle Encapsulated Resveratrol on Treatment of PeriodontitisKL2TR001882 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Elizabeta Nemeth · 2016 to 2026
$13.1M
UCLA Clinical and Translational Science InstituteKL2TR000122 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$4.5M
Cancer Cell Adaption to Glutamine DeprivationR01CA183989 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI KONG, MEI · 2014 to 2019
$1.7M
Understanding metabolic flux and the control of mammalian cell growthR00CA168997 · NCI · DUKE UNIVERSITY · PI LOCASALE, JASON W. · 2013 to 2015
$695k
NCATS NIH HHS KL2 TR000122NCATS NIH HHS KL2 TR001882NCI NIH HHS P30 CA033572NCI NIH HHS R00 CA168997NCI NIH HHS R01 CA183989
6 · The paper itself

Abstract

Poorly organized tumour vasculature often results in areas of limited nutrient supply and hypoxia. Despite our understanding of solid tumour responses to hypoxia, how nutrient deprivation regionally affects tumour growth and therapeutic response is poorly understood. Here, we show that the core region of solid tumours displayed glutamine deficiency compared with other amino acids. Low glutamine in tumour core regions led to dramatic histone hypermethylation due to decreased α-ketoglutarate levels, a key cofactor for the Jumonji-domain-containing histone demethylases. Using patient-derived (V600E)BRAF melanoma cells, we found that low-glutamine-induced histone hypermethylation resulted in cancer cell dedifferentiation and resistance to BRAF inhibitor treatment, which was largely mediated by methylation on H3K27, as knockdown of the H3K27-specific demethylase KDM6B and the methyltransferase EZH2 respectively reproduced and attenuated the low-glutamine effects in vitro and in vivo. Thus, intratumoral regional variation in the nutritional microenvironment contributes to tumour heterogeneity and therapeutic response.

Indexed as

AnimalsDNA MethylationGlutamineHistone DemethylasesHistonesHumansKetoglutaric AcidsMethylationMethyltransferasesNeoplasmsGlutamineHistone DemethylasesHistonesKetoglutaric AcidsMethyltransferases

Identifiers

PMID27617932
PMCPMC5536113
OpenAlexW2520906756

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.