Evidence map›Paper›PMID 27617343›Full record

ArticleBiochemistry2016

Crystallographic Structure of Truncated CCL21 and the Putative Sulfotyrosine-Binding Site.

Emmanuel W Smith, Eric M Lewandowski, Natasha A Moussouras, Kyle G Kroeck, Brian F Volkman, Christopher T Veldkamp, Yu Chen

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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  9. CCR7 Sulfotyrosine Enhances CCL21 Binding.International journal of molecular sciences · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Emmanuel W SmithDepartment of Molecular Medicine, University of South Florida , Tampa, Florida 33612, United States.
Eric M LewandowskiDepartment of Molecular Medicine, University of South Florida , Tampa, Florida 33612, United States.
Natasha A MoussourasDepartment of Biochemistry, Medical College of Wisconsin , Milwaukee, Wisconsin 53226, United States.
Kyle G KroeckDepartment of Molecular Medicine, University of South Florida , Tampa, Florida 33612, United States.
Brian F VolkmanDepartment of Biochemistry, Medical College of Wisconsin , Milwaukee, Wisconsin 53226, United States.
Christopher T VeldkampDepartment of Chemistry, University of Wisconsin-Whitewater , Whitewater, Wisconsin 53190, United States.
Yu ChenDepartment of Molecular Medicine, University of South Florida , Tampa, Florida 33612, United States.
University of South Florida · USMedical College of Wisconsin · USUniversity of Wisconsin–Whitewater · US

Funding

Medical Scientist Training ProgramT32GM080202 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI BARBIERI, JOSEPH T, SALZMAN, NITA H · 2010 to 2024
$5.7M
Structural Basis for Chemokine FunctionR01AI058072 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI VOLKMAN, BRIAN F · 2004 to 2019
$4.1M
Sulfotyrosine-guided discovery of small molecule chemokine inhibitorsR01GM097381 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI VOLKMAN, BRIAN F · 2011 to 2021
$2.9M
Structural Basis for Chemokine FunctionR37AI058072 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI Brian F Volkman · 2020 to 2026
$2.8M
Structural studies of chemokines that target metastatic cancer cells to the lymphR15CA159202 · NCI · UNIVERSITY OF WISCONSIN WHITEWATER · PI VELDKAMP, CHRISTOPHER T · 2011 to 2011
$335k
Mechanism behind CCL21/CCR7-mediated pancreatic cancer progressionF30CA210587 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI MOUSSOURAS, NATASHA A · 2016 to 2020
$231k
NCI NIH HHS F30 CA210587NCI NIH HHS R15 CA159202NIAID NIH HHS R37 AI058072NIGMS NIH HHS R01 GM097381NIGMS NIH HHS T32 GM080202
6 · The paper itself

Abstract

CCL21 chemokine binds the G protein-coupled receptor CCR7, aiding not only in immune response but also in cancer metastasis. Compared with other chemokines, CCL21 has a unique extended unstructured C-terminus that is truncated in some naturally occurring variants. We have determined the X-ray crystallographic structure of a truncated CCL21 (residues 1-79) lacking the extended C-terminus and identified, via two-dimensional nuclear magnetic resonance (NMR), a putative sulfotyrosine-binding site that may recognize such post-translationally modified tyrosine residues on the receptor. Compared to the previously determined NMR structure of full-length CCL21, the crystal structure presents new druggable binding hot spots resulting from an alternative N-loop conformation. In addition, whereas the previous NMR structure did not provide any structural information after residue 70, the C-terminus of the truncated CCL21, ordered up to Ala77 in our crystal structure, is placed near the N-loop and sulfotyrosine-binding site, indicating that the extended C-terminus of full-length CCL21 can interact with this important region for receptor binding. These observations suggest a potential origin for the autoinhibition of CCL21 activity that was recently described. The new crystal structure and binding hot spot analysis have important implications for the function of the CCL21 C-terminus and drug discovery.

Indexed as

Binding SitesChemokine CCL21Crystallography, X-RayNuclear Magnetic Resonance, BiomolecularProtein ConformationTyrosineChemokine CCL21Tyrosinetyrosine O-sulfate

Identifiers

PMID27617343
PMCPMC5498006
OpenAlexW2519406656

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.