Evidence map›Paper›PMID 27617060›Full record

ArticleStandards in genomic sciences2016

Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

Iain J Anderson, Priya DasSarma, Susan Lucas, Alex Copeland, Alla Lapidus, Tijana Glavina Del Rio, Hope Tice, Eileen Dalin, David C Bruce, Lynne Goodwin and 14 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. The archaeal classFrontiers in microbiology · 2022
    Article
  8. Genome Sequence ofMicrobiology resource announcements · 2020
    Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 6 institutions in 2 countries.

Iain J AndersonDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
Priya DasSarmaInstitute of Marine and Environmental Technology, Columbus Center, University of Maryland School of Medicine, University System of Maryland, Baltimore, MD 21202 USA.
Susan LucasDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
Alex CopelandDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
Alla LapidusDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
Tijana Glavina Del RioDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
Hope TiceDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
Eileen DalinDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
David C BruceDOE Joint Genome Institute, Los Alamos National Laboratory, Los Alamos, NM 87545 USA.
Lynne GoodwinDOE Joint Genome Institute, Los Alamos National Laboratory, Los Alamos, NM 87545 USA.
Sam PitluckDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
David SimsDOE Joint Genome Institute, Los Alamos National Laboratory, Los Alamos, NM 87545 USA.
Thomas S BrettinDOE Joint Genome Institute, Los Alamos National Laboratory, Los Alamos, NM 87545 USA.
John C DetterDOE Joint Genome Institute, Los Alamos National Laboratory, Los Alamos, NM 87545 USA.
Cliff S HanDOE Joint Genome Institute, Los Alamos National Laboratory, Los Alamos, NM 87545 USA.
Frank LarimerDOE Joint Genome Institute, Walnut Creek, CA 94598 USA ; Oak Ridge National Laboratory, Oak Ridge, TN 37830 USA.
Loren HauserDOE Joint Genome Institute, Walnut Creek, CA 94598 USA ; Oak Ridge National Laboratory, Oak Ridge, TN 37830 USA.
Miriam LandDOE Joint Genome Institute, Walnut Creek, CA 94598 USA ; Oak Ridge National Laboratory, Oak Ridge, TN 37830 USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
Paul RichardsonDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
Ricardo CavicchioliSchool of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, NSW 2052 Australia.
Shiladitya DasSarmaInstitute of Marine and Environmental Technology, Columbus Center, University of Maryland School of Medicine, University System of Maryland, Baltimore, MD 21202 USA.
Carl R WoeseB103 Chemical and Life Sciences Laboratory, University of Illinois at Urbana-Champaign, MC-110, 601 South Goodwin Avenue, Urbana, IL 61801 USA.
Nikos C KyrpidesDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
Joint Genome Institute · USLos Alamos National Laboratory · USOak Ridge National Laboratory · USUniversity of Maryland, Baltimore · USUniversity of Illinois Urbana-Champaign · USUNSW Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because of its psychrotolerance. We report here the complete genome sequence of H. lacusprofundi type strain ACAM 34 and its annotation. This genome is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.

Indexed as

ArchaeaCold adaptationExtremophileHalophileHalorubrumTree of life

Identifiers

PMID27617060
PMCPMC5018182
OpenAlexW2511925511

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.