Evidence map›Paper›PMID 27616802›Full record

ArticleStudies in mycology2016

The divorce of Sporothrix and Ophiostoma: solution to a problematic relationship.

Z W de Beer, T A Duong, M J Wingfield

Open access · greenAbstract read
In one paragraph

Article in Studies in mycology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed, 1 pooled it
13.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed, 1 synthesis or guideline pooled it, 200 citations in OpenAlex.

  1. Systematic review of literature to evaluate global distribution of species of theFrontiers in cellular and infection microbiology · 2024
    Pooled it
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  5. Cell surface (Amsterdam, Netherlands) · 2026
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  11. The ambrosial mycobiota ofIMA fungus · 2026
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  14. Current Insights intoJournal of fungi (Basel, Switzerland) · 2025
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  15. Article
  16. Article
  17. In vitro effects of the new antifungal compound manogepix (APX001) against the three most clinically relevant species of Sporothrix.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  18. Cell surface (Amsterdam, Netherlands) · 2025
    Article
  19. Article
  20. Article

69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Z W de BeerDepartment of Microbiology and Plant Pathology, Forestry and Agricultural Research Institute (FABI), University of Pretoria, Pretoria 0002, South Africa.
T A DuongDepartment of Genetics, Forestry and Agricultural Research Institute (FABI), University of Pretoria, Pretoria 0002, South Africa.
M J WingfieldDepartment of Microbiology and Plant Pathology, Forestry and Agricultural Research Institute (FABI), University of Pretoria, Pretoria 0002, South Africa.
University of Pretoria · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One of the causal agents of human sporotrichosis, Sporothrix schenckii, is the type species of the genus Sporothrix. During the course of the last century the asexual morphs of many Ophiostoma spp. have also been treated in Sporothrix. More recently several DNA-based studies have suggested that species of Sporothrix and Ophiostoma converge in what has become known as Ophiostoma s. lat. Were the one fungus one name principles adopted in the Melbourne Code to be applied to Ophiostoma s. lat., Sporothrix would have priority over Ophiostoma, resulting in more than 100 new combinations. The consequence would be name changes for several economically important tree pathogens including O. novo-ulmi. Alternatively, Ophiostoma could be conserved against Sporothrix, but this would necessitate changing the names of the important human pathogens in the group. In this study, we sought to resolve the phylogenetic relationship between Ophiostoma and Sporothrix. DNA sequences were determined for the ribosomal large subunit and internal transcribed spacer regions, as well as the beta-tubulin and calmodulin genes in 65 isolates. The results revealed Sporothrix as a well-supported monophyletic lineage including 51 taxa, distinct from Ophiostoma s. str. To facilitate future studies exploring species level resolution within Sporothrix, we defined six species complexes in the genus. These include the Pathogenic Clade containing the four human pathogens, together with the S. pallida-, S. candida-, S. inflata-, S. gossypina- and S. stenoceras complexes, which include environmental species mostly from soil, hardwoods and Protea infructescences. The description of Sporothrix is emended to include sexual morphs, and 26 new combinations. Two new names are also provided for species previously treated as Ophiostoma.

Indexed as

NomenclatureOne fungus one nameS. aurorae (X.D. Zhou & M.J. Wingf.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. bragantina (Pfenning & Oberw.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. candida (Kamgan et al.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. cantabriensis (P. Romón et al.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. dentifunda (Aghayeva & M.J. Wingf.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. dombeyi Z.W. de Beer, T.A. Duong & M.J. Wingf.S. epigloea (Guerrero) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. eucalyptigena (Barber & Crous) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. eucastaneae (R.W. Davidson) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. euskadiensis (P. Romón et al.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. fumea (Kamgan et al.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. fusiformis (Aghayeva & M.J. Wingf.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. gemella (Roets et al.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. gossypina (R.W. Davidson) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. lunata (Aghayeva & M.J. Wingf.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. narcissi (Limber) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. nebularis (P. Romón et al.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. nigrograna (Masuya) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. palmiculminata (Roets et al.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. phasma (Roets et al.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. polyporicola (Constant. & Ryman) Z.W. de Beer, T.A. Duong & M.J. Wingf.Sporothrix abietina (Marm. & Butin) Z.W. de Beer, T.A. Duong & M.J. Wingf.Sporothrix schenckiiSporotrichosisS. prolifera (Kowalski & Butin) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. protea-sedis (Roets et al.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. rossii Z.W. de Beer, T.A. Duong & M.J. WingfS. stenoceras (Robak) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. thermara (J.A. van der Linde et al.) Z.W. de Beer, T.A. Duong & M.J. Wingf.S. zambiensis (Roets et al.) Z.W. de Beer, T.A. Duong & M.J. Wingf.Taxonomy

Identifiers

PMID27616802
PMCPMC5007658
OpenAlexW2485558449

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.