Evidence map›Paper›PMID 27613409›Full record

ArticleAmino acids2016

GCN2- and eIF2α-phosphorylation-independent, but ATF4-dependent, induction of CARE-containing genes in methionine-deficient cells.

Kevin M Mazor, Martha H Stipanuk

Abstract read
In one paragraph

Article in Amino acids, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Vitamin D Promotes Mucosal Barrier System of Fish Skin Infected withInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Targeting the methionine addiction of cancer.American journal of cancer research · 2022
    Review
  12. Role of Proteasomes in Inflammation.Journal of clinical medicine · 2021
    Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Mitochondrial cross-compartmental signalling to maintain proteostasis and longevity.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kevin M MazorDivision of Nutritional Sciences, Cornell University, Savage Hall, Rm. 227, Ithaca, NY, 14853, USA.
Martha H StipanukDivision of Nutritional Sciences, Cornell University, Savage Hall, Rm. 227, Ithaca, NY, 14853, USA. mhs6@cornell.edu.
Cornell University · US

Funding

NUTRITIONAL REGULATION OF CYSTEINE DIOXYGENASER01DK056649 · NIDDK · CORNELL UNIVERSITY ITHACA · PI STIPANUK, MARTHA H · 2000 to 2013
$4.0M
Cross-talk between GCN2 and mTOR in integration of nutrient signalingR56DK083473 · NIDDK · CORNELL UNIVERSITY · PI STIPANUK, MARTHA H · 2009 to 2009
$193k
NIDDK NIH HHS R01 DK056649NIDDK NIH HHS R56 DK083473
6 · The paper itself

Abstract

Amino-acid deprivation is sensed by the eIF2α kinase GCN2. Under conditions of essential amino-acid limitation, GCN2 phosphorylates eIF2α, inhibiting the formation of a new ternary complex and hence mRNA translation initiation. While decreasing global mRNA translation, eIF2α phosphorylation also increases the translation of the integrated stress response (ISR) transcription factor ATF4, which increases the expression of many stress response genes that contain a C/EBP-ATF response element (CARE), including Atf4, 4Ebp1, Asns, and Chop. Using wild-type as well as Gcn2 knockout and unphosphorylatable eIF2α mutant MEFs, we characterized a novel GCN2/eIF2α phosphorylation-independent, but ATF4-dependent, pathway that upregulates the expression of CARE-containing genes in MEFs lacking GCN2 or phosphorylatable eIF2α when these cells are exposed to methionine-deficient, and to a lesser extent arginine- or histidine-deficient, medium. Thus, we demonstrate a GCN2/eIF2α phosphorylation-independent pathway that converges with the GCN2/eIF2α kinase-dependent pathway at the level of ATF4 and similarly results in the upregulation of CARE-containing genes. We hypothesize that the essential role of methionine-charged initiator tRNA in forming ternary complex is responsible for the robust ability of methionine deficiency to induce ATF4 and the ISR even in the absence of GCN2 or eIF2α kinase activity.

Indexed as

Protein BiosynthesisActivating Transcription Factor 4Amino AcidsEukaryotic Initiation Factor-2FibroblastsGlial Cell Line-Derived Neurotrophic FactorHumansMethioninePhosphorylationProtein Serine-Threonine KinasesRNA, MessengerSignal TransductionTernary Complex FactorsTranscriptional ActivationActivating Transcription Factor 4Amino AcidsAtf4 protein, mouseEif2ak4 protein, mouseEukaryotic Initiation Factor-2Gdnf protein, mouseGlial Cell Line-Derived Neurotrophic FactorMethionineProtein Serine-Threonine KinasesRNA, MessengerTernary Complex FactorsATF4CAREeIF2αGCN2Methionine

Identifiers

PMID27613409
PMCPMC5107328
OpenAlexW2514036928

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.