Evidence map›Paper›PMID 27613381›Full record

ArticleBMC genetics2016

Genome-wide characterization and expression analysis of MYB transcription factors in Gossypium hirsutum.

Haron Salih, Wenfang Gong, Shoupu He, Gaofei Sun, Junling Sun, Xiongming Du

Open access · diamondAbstract read
In one paragraph

Article in BMC genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
31.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 150 citations in OpenAlex.

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6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Haron SalihState Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, 455000, China.
Wenfang GongState Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, 455000, China.
Shoupu HeState Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, 455000, China.
Gaofei SunDepartment of Computer Science and Information Engineering, Anyang Institute of Technology, Anyang, China.
Junling SunState Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, 455000, China. sunjl000@163.com.
Xiongming DuState Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, 455000, China. dujeffrey8848@hotmail.com.
Cotton Research Institute · CNAnyang Institute of Technology · CNUniversity of Zalingei · SD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMYB family proteins are one of the most abundant transcription factors in the cotton plant and play diverse roles in cotton growth and evolution. Previously, few studies have been conducted in upland cotton, Gossypium hirsutum. The recent release of the G. hirsutum genome sequence provides a great opportunity to identify and characterize the entire upland cotton MYB protein family.

resultsIn this study, we undertook a comprehensive genome-wide characterization and expression analysis of the MYB transcription factor family during cotton fiber development. A total of 524 non-redundant cotton MYB genes, among 1986 MYB and MYB-related putative proteins, were identified and classified into four subfamilies including 1R-MYB, 2R-MYB, 3R-MYB, and 4R-MYB. Based on phylogenetic tree analysis, MYB transcription factors were divided into 16 subgroups. The results showed that the majority (69.1 %) of GhMYBs genes belong to the 2R-MYB subfamily in upland cotton.

conclusionOur comparative genomics analysis has provided novel insights into the roles of MYB transcription factors in cotton fiber development. These results provide the basis for a greater understanding of MYB regulatory networks and to develop new approaches to improve cotton fiber development.

Indexed as

Gene Expression Regulation, PlantGenome-Wide Association StudyChromosome MappingComputational BiologyConserved SequenceCotton FiberDatabases, Nucleic AcidGene Expression ProfilingGenetic Association StudiesGenome, PlantGenomicsGossypiumHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationMultigene FamilyNucleotide MotifsPlant ProteinsProto-Oncogene Proteins c-mybTranscription FactorsComparative genomics analysisFiber developmentMYB genesUpland cotton

Identifiers

PMID27613381
PMCPMC5017022
OpenAlexW2512789814

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.