Evidence map›Paper›PMID 27613236›Full record

ArticleMutagenesis2017

Mycobacterium tuberculosis and Mycobacterium marinum non-homologous end-joining proteins can function together to join DNA ends in Escherichia coli.

Douglas G Wright, Reneau Castore, Runhua Shi, Amrita Mallick, Don G Ennis, Lynn Harrison

Open access · bronzeAbstract read
In one paragraph

Article in Mutagenesis, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. CRISPR-Cas12a-Assisted Genome Editing inFrontiers in bioengineering and biotechnology · 2020
    Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Douglas G WrightDepartment of Molecular and Cellular Physiology.
Reneau CastoreDepartment of Molecular and Cellular Physiology.
Runhua ShiDepartment of Medicine and Feist-Weiller Cancer Center, Louisiana State University Health Sciences Center, 1501 Kings Highway, Shreveport, LA 71103, USA.
Amrita MallickDepartment of Biology, University of Louisiana at Lafayette, PO Box 42451, Lafayette, LA 70504, USA.
Don G EnnisDepartment of Biology, University of Louisiana at Lafayette, PO Box 42451, Lafayette, LA 70504, USA.
Lynn HarrisonDepartment of Molecular and Cellular Physiology.
Louisiana State University Health Sciences Center Shreveport · USUniversity of Louisiana at Lafayette · US

Funding

DNA REPAIR OF MULTIPLY DAMAGED SITES IN CELLSR01CA085693 · NCI · LOUISIANA STATE UNIV HSC SHREVEPORT · PI HARRISON, LYNN · 2000 to 2010
$2.4M
Enhancing radiation and cisplatin HNSCC cell killing by inhibiting mitochondrialR21CA167796 · NCI · LOUISIANA STATE UNIV HSC SHREVEPORT · PI HARRISON, LYNN · 2012 to 2013
$332k
NCI NIH HHS R01 CA085693NCI NIH HHS R21 CA167796
6 · The paper itself

Abstract

Mycobacterium tuberculosis and Mycobacterium smegmatis express a Ku protein and a DNA ligase D and are able to repair DNA double strand breaks (DSBs) by non-homologous end-joining (NHEJ). This pathway protects against DNA damage when bacteria are in stationary phase. Mycobacterium marinum is a member of this mycobacterium family and like M. tuberculosis is pathogenic. M. marinum lives in water, forms biofilms and infects fish and frogs. M. marinum is a biosafety level 2 (BSL2) organism as it can infect humans, although infections are limited to the skin. M. marinum is accepted as a model to study mycobacterial pathogenesis, as M. marinum and M. tuberculosis are genetically closely related and have similar mechanisms of survival and persistence inside macrophage. The aim of this study was to determine whether M. marinum could be used as a model to understand M. tuberculosis NHEJ repair. We identified and cloned the M. marinum genes encoding NHEJ proteins and generated E. coli strains that express the M. marinum Ku (Mm-Ku) and ligase D (Mm-Lig) individually or together (LHmKumLig strain) from expression vectors integrated at phage attachment sites in the genome. We demonstrated that Mm-Ku and Mm-Lig are both required to re-circularize Cla I-linearized plasmid DNA in E. coli. We compared repair of strain LHmKumLig with that of an E. coli strain (BWKuLig#2) expressing the M. tuberculosis Ku (Mt-Ku) and ligase D (Mt-Lig), and found that LHmKumLig performed 3.5 times more repair and repair was more accurate than BWKuLig#2. By expressing the Mm-Ku with the Mt-Lig, or the Mt-Ku with the Mm-Lig in E. coli, we have shown that the NHEJ proteins from M. marinum and M. tuberculosis can function together to join DNA DSBs. NHEJ repair is therefore conserved between the two species. Consequently, M. marinum is a good model to study NHEJ repair during mycobacterial pathogenesis.

Indexed as

DNA Breaks, Double-StrandedDNA End-Joining RepairAmino Acid SequenceBacterial ProteinsCloning, MolecularDNA, BacterialDNA LigasesEscherichia coliKu AutoantigenMycobacterium marinumMycobacterium tuberculosisPlasmidsSequence AlignmentBacterial ProteinsDNA, BacterialDNA LigasesKu Autoantigen

Identifiers

PMID27613236
PMCPMC5989629
OpenAlexW2514799107

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.