Evidence map›Paper›PMID 27612988›Full record

ArticleHaematologica2016

Marked overlap of four genetic syndromes with dyskeratosis congenita confounds clinical diagnosis.

Amanda J Walne, Laura Collopy, Shirleny Cardoso, Alicia Ellison, Vincent Plagnol, Canan Albayrak, Davut Albayrak, Sara Sebnem Kilic, Turkan Patıroglu, Haluk Akar and 8 more

Open access · goldAbstract read
In one paragraph

Article in Haematologica, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  4. Inherited Telomere Biology Disorders: Pathophysiology, Clinical Presentation, Diagnostics, and Treatment.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2024
    Review
  5. Article
  6. Article
  7. Dyskeratosis congenita and telomere biology disorders.Hematology. American Society of Hematology. Education Program · 2022
    Review
  8. Article
  9. Article
  10. Article
  11. miRNA-Based Regulation of Alternative RNA Splicing in Metazoans.International journal of molecular sciences · 2021
    Review
  12. Article
  13. NovelGenes · 2021
    Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Genome instability is a consequence of transcription deficiency in patients with bone marrow failure harboring biallelicProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 4 countries.

Amanda J WalneCentre for Genomics and Child Health, Blizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, Barts NHS Trust, London, UK a.walne@qmul.ac.uk.
Laura CollopyCentre for Genomics and Child Health, Blizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, Barts NHS Trust, London, UK.
Shirleny CardosoCentre for Genomics and Child Health, Blizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, Barts NHS Trust, London, UK.
Alicia EllisonCentre for Genomics and Child Health, Blizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, Barts NHS Trust, London, UK.
Vincent PlagnolUniversity College London Genetics Institute, UK.
Canan AlbayrakDepartment of Pediatric Hematology, Ondokuz Mayis University, Samsun, Turkey.
Davut AlbayrakDepartment of Pediatric Hematology, Ondokuz Mayis University, Samsun, Turkey.
Sara Sebnem KilicDepartment of Pediatric Immunology Uludag University, Bursa, Turkey.
Turkan PatırogluDepartment of Pediatric Immunology Erciyes University Medical Facility, Kayseri, Turkey.
Haluk AkarDepartment of Pediatric Immunology Erciyes University Medical Facility, Kayseri, Turkey.
Keith GodfreyDepartment of Pediatric Dermatology and NIHR Southampton Biomedical Research Center, University Hospital, Southampton and University of Southampton, UK.
Tina CarterDepartment of Oncology and Haematology, Princess Margaret Hospital, Perth, WA, Australia.
Makia MarafieClinical Cancer and Community Genetics, Kuwait Medical Genetics Center, Al-Sabah Medical area, Kuwait.
Ajay VoraDepartment of Haematology, Sheffield Children's NHS foundation Trust, Sheffield, UK.
Mikael SundinSection of Pediatric Hematology/Immunology/SCT, Astrid Lindgren Children's Hospital, Karolinska University Hospital, Stockholm, Sweden Division of Pediatrics, CLINTEC, Karolinska Institutet, Stockholm, Sweden.
Thomas VulliamyCentre for Genomics and Child Health, Blizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, Barts NHS Trust, London, UK.
Hemanth TummalaCentre for Genomics and Child Health, Blizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, Barts NHS Trust, London, UK.
Inderjeet DokalCentre for Genomics and Child Health, Blizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, Barts NHS Trust, London, UK.
Queen Mary University of London · GBErciyes University · TROndokuz Mayıs University · TRBursa Uludağ Üni̇versi̇tesi̇ · TRKarolinska University Hospital · SEPrincess Margaret Hospital for Children · AUSheffield Children's NHS Foundation Trust · GBUniversity College London · GBUniversity Hospital Southampton NHS Foundation Trust · GB

Funding

Medical Research Council MC_UU_12011/4Medical Research Council MR/K000292/1
6 · The paper itself

Abstract

Dyskeratosis congenita is a highly pleotropic genetic disorder. This heterogeneity can lead to difficulties in making an accurate diagnosis and delays in appropriate management. The aim of this study was to determine the underlying genetic basis in patients presenting with features of dyskeratosis congenita and who were negative for mutations in the classical dyskeratosis congenita genes. By whole exome and targeted sequencing, we identified biallelic variants in genes that are not associated with dyskeratosis congenita in 17 individuals from 12 families. Specifically, these were homozygous variants in USB1 (8 families), homozygous missense variants in GRHL2 (2 families) and identical compound heterozygous variants in LIG4 (2 families). All patients had multiple somatic features of dyskeratosis congenita but not the characteristic short telomeres. Our case series shows that biallelic variants in USB1, LIG4 and GRHL2, the genes mutated in poikiloderma with neutropenia, LIG4/Dubowitz syndrome and the recently recognized ectodermal dysplasia/short stature syndrome, respectively, cause features that overlap with dyskeratosis congenita. Strikingly, these genes also overlap in their biological function with the known dyskeratosis congenita genes that are implicated in telomere maintenance and DNA repair pathways. Collectively, these observations demonstrate the marked overlap of dyskeratosis congenita with four other genetic syndromes, confounding accurate diagnosis and subsequent management. This has important implications for establishing a genetic diagnosis when a new patient presents in the clinic. Patients with clinical features of dyskeratosis congenita need to have genetic analysis of USB1, LIG4 and GRHL2 in addition to the classical dyskeratosis congenita genes and telomere length measurements.

Indexed as

DNA-Binding ProteinsDNA Ligase ATPDyskeratosis CongenitaExomeGenetic VariationHumansPedigreePhosphoric Diester HydrolasesSequence Analysis, DNASyndromeTranscription FactorsDNA-Binding ProteinsDNA Ligase ATPGRHL2 protein, humanLIG4 protein, humanPhosphoric Diester HydrolasesTranscription FactorsUSB1 protein, human

Identifiers

PMID27612988
PMCPMC5046647
OpenAlexW2514412340

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.