Evidence map›Paper›PMID 27611921›Full record

ArticleBlood cancer journal2016

lncRNA profiling in early-stage chronic lymphocytic leukemia identifies transcriptional fingerprints with relevance in clinical outcome.

D Ronchetti, M Manzoni, L Agnelli, C Vinci, S Fabris, G Cutrona, S Matis, M Colombo, S Galletti, E Taiana and 12 more

Open access · goldAbstract read
In one paragraph

Article in Blood cancer journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 2 pooled it
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 2 syntheses or guidelines pooled it, 55 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Epigenetics in B-CLL.International journal of genomics · 2026
    Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Life (Basel, Switzerland) · 2022
    Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Non-Coding RNAs: The "Dark Side Matter" of the CLL Universe.Pharmaceuticals (Basel, Switzerland) · 2021
    Review
  18. Article
  19. Article
  20. Non-Coding RNAs as Cancer Hallmarks in Chronic Lymphocytic Leukemia.International journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 1 country.

D RonchettiDepartment of Oncology and Hemato-Oncology, University of Milan, Milan, Italy.
M ManzoniDepartment of Oncology and Hemato-Oncology, University of Milan, Milan, Italy.
L AgnelliDepartment of Oncology and Hemato-Oncology, University of Milan, Milan, Italy.
C VinciDepartment of Oncology and Hemato-Oncology, University of Milan, Milan, Italy.ORCID 0000-0001-5689-7169
S FabrisHematology Unit, Fondazione IRCCS Ca' Granda, Ospedale Maggiore Policlinico, Milan, Italy.
G CutronaMolecular Pathology Unit, IRCCS-A.O.U. San Martino-IST, Genoa, Italy.
S MatisMolecular Pathology Unit, IRCCS-A.O.U. San Martino-IST, Genoa, Italy.
M ColomboMolecular Pathology Unit, IRCCS-A.O.U. San Martino-IST, Genoa, Italy.
S GallettiDepartment of Oncology and Hemato-Oncology, University of Milan, Milan, Italy.
E TaianaHematology Unit, Fondazione IRCCS Ca' Granda, Ospedale Maggiore Policlinico, Milan, Italy.
A G RecchiaHematology Unit, Department of Onco-Hematology, A.O. of Cosenza, Cosenza, Italy.
S BossioHematology Unit, Department of Onco-Hematology, A.O. of Cosenza, Cosenza, Italy.
M GentileHematology Unit, Department of Onco-Hematology, A.O. of Cosenza, Cosenza, Italy.
C MusolinoSchool and Division of Hematology, University Hospital 'G. Martino', Messina, Italy.
F Di RaimondoDepartment of Biomedical Sciences, Division of Haematology, University of Catania and Ferrarotto Hospital, Catania, Italy.
A GrilliCenter for Genome Research Dept. of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy.
S BicciatoCenter for Genome Research Dept. of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy.ORCID 0000-0002-1944-7078
A CortelezziDepartment of Oncology and Hemato-Oncology, University of Milan, Milan, Italy.
P TassoneDepartment of Experimental and Clinical Medicine, Magna Graecia University, Catanzaro, Italy.
F MorabitoHematology Unit, Department of Onco-Hematology, A.O. of Cosenza, Cosenza, Italy.
M FerrariniScientific Direction, IRCCS-A.O.U. San Martino-IST, Genoa, Italy.
A NeriDepartment of Oncology and Hemato-Oncology, University of Milan, Milan, Italy.
University of Milan · ITAzienda Ospedaliera di Cosenza · ITOspedale Policlinico San Martino · ITFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico · ITUniversity of Modena and Reggio Emilia · ITMagna Graecia University · ITUniversity of Catania · ITUniversity of Messina · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Long non-coding RNAs (lncRNAs) represent a novel class of functional RNA molecules with an important emerging role in cancer. To elucidate their potential pathogenetic role in chronic lymphocytic leukemia (CLL), a biologically and clinically heterogeneous neoplasia, we investigated lncRNAs expression in a prospective series of 217 early-stage Binet A CLL patients and 26 different subpopulations of normal B-cells, through a custom annotation pipeline of microarray data. Our study identified a 24-lncRNA-signature specifically deregulated in CLL compared with the normal B-cell counterpart. Importantly, this classifier was validated on an independent data set of CLL samples. Belonging to the lncRNA signature characterizing distinct molecular CLL subgroups, we identified lncRNAs recurrently associated with adverse prognostic markers, such as unmutated IGHV status, CD38 expression, 11q and 17p deletions, and NOTCH1 mutations. In addition, correlation analyses predicted a putative lncRNAs interplay with genes and miRNAs expression. Finally, we generated a 2-lncRNA independent risk model, based on lnc-IRF2-3 and lnc-KIAA1755-4 expression, able to distinguish three different prognostic groups in our series of early-stage patients. Overall, our study provides an important resource for future studies on the functions of lncRNAs in CLL, and contributes to the discovery of novel molecular markers with clinical relevance associated with the disease.

Indexed as

Gene Expression ProfilingRNA, Long NoncodingTranscriptomeB-LymphocytesCluster AnalysisDisease ProgressionGene Expression Regulation, LeukemicHumansKaplan-Meier EstimateLeukemia, Lymphocytic, Chronic, B-CellMicroRNAsNeoplasm StagingPrognosisRNA InterferenceMicroRNAsRNA, Long Noncoding

Identifiers

PMID27611921
PMCPMC5056969
OpenAlexW2516692944

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.