Evidence map›Paper›PMID 27611488›Full record

ArticleAmerican journal of respiratory and critical care medicine2017

Identification of Four Novel Loci in Asthma in European American and African American Populations.

Berta Almoguera, Lyam Vazquez, Frank Mentch, John Connolly, Jennifer A Pacheco, Agnes S Sundaresan, Peggy L Peissig, James G Linneman, Catherine A McCarty, David Crosslin and 12 more

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory and critical care medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 4 pooled it
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 4 syntheses or guidelines pooled it, 99 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Trial
  6. Article
  7. Article
  8. Observational
  9. Article
  10. Genetics of chronic respiratory disease.Nature reviews. Genetics · 2024
    Review
  11. Article
  12. Genetic analyses of chr11p15.5 region identifyThe Journal of asthma : official journal of the Association for the Care of Asthma · 2023
    Article
  13. Article
  14. Article
  15. International journal of molecular sciences · 2023
    Review
  16. Review
  17. Article
  18. Review
  19. Frontiers in immunology · 2023
    Article
  20. Multiancestral polygenic risk score for pediatric asthma.The Journal of allergy and clinical immunology · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 9 institutions in 1 country.

Berta Almoguera1 Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Lyam Vazquez1 Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Frank Mentch1 Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
John Connolly1 Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Jennifer A Pacheco2 Northwestern University Feinberg School of Medicine, Chicago, Illinois.
Agnes S Sundaresan3 Geisinger Health System, Danville, Pennsylvania.
Peggy L Peissig4 Marshfield Clinic Research Foundation, Marshfield, Wisconsin.
James G Linneman4 Marshfield Clinic Research Foundation, Marshfield, Wisconsin.
Catherine A McCarty5 Essentia Institute of Rural Health, Duluth, Minnesota.
David Crosslin6 University of Washington Medical Center, Seattle, Washington.
David S Carrell7 Group Health Research Institute, Seattle, Washington.
Todd Lingren8 Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Bahram Namjou-Khales8 Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
John B Harley8 Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Eric Larson7 Group Health Research Institute, Seattle, Washington.
Gail P Jarvik6 University of Washington Medical Center, Seattle, Washington.
Murray Brilliant4 Marshfield Clinic Research Foundation, Marshfield, Wisconsin.
Marc S Williams3 Geisinger Health System, Danville, Pennsylvania.
Iftikhar J Kullo10 Mayo Clinic, Rochester, Minnesota; and.
Erik B Hysinger1 Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Patrick M A Sleiman1 Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Hakon Hakonarson1 Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Children's Hospital of Philadelphia · USCincinnati Children's Hospital Medical Center · USMarshfield Clinic · USGeisinger Health System · USKaiser Permanente Washington Health Research Institute · USUniversity of Washington Medical Center · USEssentia Health · USMayo Clinic · USNorthwestern University · US

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Trevor M Penning · 2006 to 2026
$35.3M
JH/CIDR Genotyping for Genome-Wide Association StudiesU01HG004438 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2007 to 2011
$24.2M
A Center for GEI Association StudiesU01HG004424 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY · 2007 to 2010
$21.4M
Genomic Basis of Susceptibility to COVID-19 Infection and its ComplicationsU01HG006379 · NHGRI · MAYO CLINIC ROCHESTER · PI Richard R. Sharp · 2011 to 2026
$16.5M
Variation, Function, and Disease Supplement ProgramU01HG008657 · NHGRI · UNIVERSITY OF WASHINGTON · PI David Russell Crosslin, Gail Pairitz Jarvik · 2015 to 2026
$13.4M
The Electronic Medical Records and Genomics (eMERGE) Network Phase III Coordinating Center (U01)U01HG008701 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PETERSON, JOSEPH F. · 2015 to 2019
$7.1M
eMERGE Coordinating Center - Administrative SupplementU01HG006385 · NHGRI · VANDERBILT UNIVERSITY · PI HARRIS, PAUL A. · 2011 to 2014
$5.4M
The Future of Genomics Medicine in Patient Care: Contributions from CHOPU01HG008684 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI HAKONARSON, HAKON · 2015 to 2019
$5.0M
OMOP information model for eMERGE phenotypingU01HG008679 · NHGRI · GEISINGER CLINIC · PI WILLIAMS, MARC S. · 2015 to 2019
$4.4M
Geisinger eGenonic Medicine (GeM) ProgramU01HG006382 · NHGRI · GEISINGER CLINIC · PI CAREY, DAVID J., WILLIAMS, MARC S. · 2011 to 2014
$4.3M
Better Outcomes for Children: Promoting Excellence in Healthcare Genomics to Inform PolicyU01HG008666 · NHGRI · CINCINNATI CHILDRENS HOSP MED CTR · PI HARLEY, JOHN BARKER · 2015 to 2019
$4.2M
A Personalized Genomic Medicine Pilot Program Using the NJgene eMERGE ExperienceU01HG006388 · NHGRI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHISHOLM, REX L, SMITH, MAUREEN E · 2011 to 2014
$4.1M
NHGRI NIH HHS U01 HG004424NHGRI NIH HHS U01 HG004438NHGRI NIH HHS U01 HG006375NHGRI NIH HHS U01 HG006379NHGRI NIH HHS U01 HG006382NHGRI NIH HHS U01 HG006385NHGRI NIH HHS U01 HG006388NHGRI NIH HHS U01 HG006389NHGRI NIH HHS U01 HG006828NHGRI NIH HHS U01 HG006830NHGRI NIH HHS U01 HG008657NHGRI NIH HHS U01 HG008666NHGRI NIH HHS U01 HG008673NHGRI NIH HHS U01 HG008679NHGRI NIH HHS U01 HG008684NHGRI NIH HHS U01 HG008701NIEHS NIH HHS P30 ES013508
6 · The paper itself

Abstract

rationaleDespite significant advances in knowledge of the genetic architecture of asthma, specific contributors to the variability in the burden between populations remain uncovered.

objectivesTo identify additional genetic susceptibility factors of asthma in European American and African American populations.

methodsA phenotyping algorithm mining electronic medical records was developed and validated to recruit cases with asthma and control subjects from the Electronic Medical Records and Genomics network. Genome-wide association analyses were performed in pediatric and adult asthma cases and control subjects with European American and African American ancestry followed by metaanalysis. Nominally significant results were reanalyzed conditioning on allergy status. MEASUREMENTS AND MAIN

resultsThe validation of the algorithm yielded an average of 95.8% positive predictive values for both cases and control subjects. The algorithm accrued 21,644 subjects (65.83% European American and 34.17% African American). We identified four novel population-specific associations with asthma after metaanalyses: loci 6p21.31, 9p21.2, and 10q21.3 in the European American population, and the PTGES gene in African Americans. TEK at 9p21.2, which encodes TIE2, has been shown to be involved in remodeling the airway wall in asthma, and the association remained significant after conditioning by allergy. PTGES, which encodes the prostaglandin E synthase, has also been linked to asthma, where deficient prostaglandin E

conclusionsThis study adds to understanding of the genetic architecture of asthma in European Americans and African Americans and reinforces the need to study populations of diverse ethnic backgrounds to identify shared and unique genetic predictors of asthma.

Indexed as

AdolescentAdultAirway RemodelingAlgorithmsAsthmaBlack or African AmericanChildChild, PreschoolData MiningElectronic Health RecordsFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMaleMeta-Analysis as TopicProstaglandin-E SynthasesPTGES protein, humanasthmageneticsgenome-wide association study

Identifiers

PMID27611488
PMCPMC5378422
OpenAlexW2510730292

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.