Evidence map›Paper›PMID 27610567›Full record

ArticleCell2016

Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex.

Philip J Robinson, Michael J Trnka, David A Bushnell, Ralph E Davis, Pierre-Jean Mattei, Alma L Burlingame, Roger D Kornberg

Abstract read
In one paragraph

Article in Cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 143 papers.

0numbers the graph read from it
0cells of the map it votes in
143citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

143 citing papers in PubMed.

  1. Article
  2. Article
  3. The molecular basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2026
    Review
  4. Current Challenges of Transcription Compartmentalization Research.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. When MED16 Meets Plant Growth, Development, and Stress Response.International journal of molecular sciences · 2026
    Review
  10. CDK12 and CDK13 in oncology: from RNA regulation to therapeutic targeting.Cellular oncology (Dordrecht, Netherlands) · 2026
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review

83 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Philip J RobinsonDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Michael J TrnkaDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.
David A BushnellDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Ralph E DavisDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Pierre-Jean MatteiDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Alma L BurlingameDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.
Roger D KornbergDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address: kornberg@stanford.edu.

Funding

Structure of the Eukaryote Transcription ApparatusR01AI021144 · NIAID · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1985 to 2018
$10.3M
STRUCTURE OF RNA POLYMERASE IIR01GM049985 · NIGMS · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 1993 to 2020
$10.2M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Bio-Organic Biomedical Mass Spectromy ResourceP41GM103481 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURLINGAME, ALMA L · 2012 to 2015
$6.4M
RNA POLYMERASE II TRANSCRIPTION SYSTEM FROM YEASTR01GM036659 · NIGMS · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1986 to 2016
$4.7M
RNA POLYMERASE II TRANSCRIPTION SYSTEM FROM YEASTR37GM036659 · NIGMS · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1998 to 2008
$4.6M
Purchase of Q-Exactive Mass SpectrometerS10OD016229 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURLINGAME, ALMA L · 2013 to 2013
$507k
Facilitating large scale biomass generation: acquisition of an automated 100 L feS10RR028096 · NCRR · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 2010 to 2010
$324k
NCRR NIH HHS S10 RR028096NIAID NIH HHS R01 AI021144NIGMS NIH HHS P41 GM103311NIGMS NIH HHS P41 GM103481NIGMS NIH HHS R01 GM036659NIGMS NIH HHS R01 GM049985NIGMS NIH HHS R37 GM036659NIH HHS S10 OD016229
6 · The paper itself

Abstract

A complete, 52-protein, 2.5 million dalton, Mediator-RNA polymerase II pre-initiation complex (Med-PIC) was assembled and analyzed by cryo-electron microscopy and by chemical cross-linking and mass spectrometry. The resulting complete Med-PIC structure reveals two components of functional significance, absent from previous structures, a protein kinase complex and the Mediator-activator interaction region. It thereby shows how the kinase and its target, the C-terminal domain of the polymerase, control Med-PIC interaction and transcription.

Indexed as

Models, MolecularCryoelectron MicroscopyGene Expression RegulationMass SpectrometryMediator ComplexPhosphorylationProtein Structure, TertiaryProtein SubunitsRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsMediator ComplexProtein SubunitsRNA Polymerase IISaccharomyces cerevisiae Proteinscross-linkingcryo-EMmass spectrometryMediator complexPre-initiation complexRNA polymerase II carboxy-terminal domainTFIIHTFIIKTranscription

Identifiers

PMID27610567
PMCPMC5589196

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.