ArticleFrontiers in microbiology2016
Bacterial Abilities and Adaptation Toward the Rhizosphere Colonization.
Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed.
- Comparative study of the effects of different carbon substrates on acidification-driven mineral weathering byApplied and environmental microbiology · 2026Article
- Synthetic bacterium-facilitated colonization of nitrogen-fixing bacteria for remodeling the rhizosphere microbiome and improving plant yield.Microbiome · 2025Article
- Pan-genome analysis of Morganella morganii reveals niche-specific selection of functional traits: friend or foe?Archives of microbiology · 2025Article
- Root-exuded sugars as drivers of rhizosphere microbiome assembly.Plant biotechnology (Tokyo, Japan) · 2025Article
- Rhizosphere-triggered viral lysogeny mediates microbial metabolic reprogramming to enhance arsenic oxidation.Nature communications · 2025Article
- Nitrogen effects and genotypic variation in Cd absorption, translocation, and chemical forms in wheat.Frontiers in plant science · 2025Article
- Metagenomic insights to bacterial communities, functional traits, and soil health in banana smallholder agroecosystems of Kenya.Frontiers in microbiology · 2025Article
- Whole genome analysis ofMicrobiology spectrum · 2024Article
- MarR Family Transcriptional Regulators and Their Roles in Plant-Interacting Bacteria.Microorganisms · 2023Review
- Green Manures Alter Taxonomic and Functional Characteristics of Soil Bacterial Communities.Microbial ecology · 2023Article
- Structure and function of microbiomes in the rhizosphere and endosphere response to temperature and precipitation variation in Inner Mongolia steppes.Frontiers in plant science · 2023Article
- Prevalence and mobility of integrative and conjugative elements within aFrontiers in microbiology · 2022Article
- Insights into the taxonomic and functional characterization of agricultural crop core rhizobiomes and their potential microbial drivers.Scientific reports · 2021Article
- The Effects of Soil Depth on the Structure of Microbial Communities in Agricultural Soils in Iowa, USA.Applied and environmental microbiology · 2021Article
- Diversity of the Bacterial Microbiome Associated With the Endosphere and Rhizosphere of Different Cassava (Frontiers in microbiology · 2021Article
- Metagenomic Insights into Rhizospheric Microbiome Profiling in Lentil Cultivars Unveils Differential Microbial Nitrogen and Phosphorus Metabolism under Rice-Fallow Ecology.International journal of molecular sciences · 2020Article
- Metabolomic effects of the colonization of Medicago truncatula by the facultative endophyte Arthrobacter agilis UMCV2 in a foliar inoculation system.Scientific reports · 2020Article
- Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands.The ISME journal · 2020Article
- Wheat dwarfing influences selection of the rhizosphere microbiome.Scientific reports · 2020Article
- Microbial Communities Associated With Long-Term Tillage and Fertility Treatments in a Corn-Soybean Cropping System.Frontiers in microbiology · 2020Article
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Authors and funding
3 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The rhizosphere harbors one of the most complex, diverse, and active plant-associated microbial communities. This community can be recruited by the plant host to either supply it with nutrients or to help in the survival under stressful conditions. Although selection for the rhizosphere community is evident, the specific bacterial traits that make them able to colonize this environment are still poorly understood. Thus, here we used a combination of community level physiological profile (CLPP) analysis and 16S rRNA gene quantification and sequencing (coupled with in silico analysis and metagenome prediction), to get insights on bacterial features and processes involved in rhizosphere colonization of sugarcane. CLPP revealed a higher metabolic activity in the rhizosphere compared to bulk soil, and suggested that D-galacturonic acid plays a role in bacterial selection by the plant roots (supported by results of metagenome prediction). Quantification of the 16S rRNA gene confirmed the higher abundance of bacteria in the rhizosphere. Sequence analysis showed that of the 252 classified families sampled, 24 were significantly more abundant in the bulk soil and 29 were more abundant in the rhizosphere. Furthermore, metagenomes predicted from the 16S rRNA gene sequences revealed a significant higher abundance of predicted genes associated with biofilm formation and with horizontal gene transfer (HGT) processes. In sum, this study identified major bacterial groups and their potential abilities to occupy the sugarcane rhizosphere, and indicated that polygalacturonase activity and HGT events may be important features for rhizosphere colonization.
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