Evidence map›Paper›PMID 27610106›Full record

ArticleFrontiers in microbiology2016

New Genomic Insights into "Entotheonella" Symbionts in Theonella swinhoei: Mixotrophy, Anaerobic Adaptation, Resilience, and Interaction.

Fang Liu, Jinlong Li, Guofang Feng, Zhiyong Li

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
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  9. Review
  10. Strategies for culturing active/dormant marine microbes.Marine life science & technology · 2021
    Review
  11. Article
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  15. Article
  16. Draft Genome Sequence of "Genome announcements · 2017
    Article
  17. Insights into the lifestyle of uncultured bacterial natural product factories associated with marine sponges.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Fang LiuMarine Biotechnology Laboratory, Department of Bioengineering, State Key Laboratory of Microbial Metabolism-School of Life Sciences and Biotechnology, Shanghai Jiao Tong University Shanghai, China.
Jinlong LiMarine Biotechnology Laboratory, Department of Bioengineering, State Key Laboratory of Microbial Metabolism-School of Life Sciences and Biotechnology, Shanghai Jiao Tong University Shanghai, China.
Guofang FengMarine Biotechnology Laboratory, Department of Bioengineering, State Key Laboratory of Microbial Metabolism-School of Life Sciences and Biotechnology, Shanghai Jiao Tong University Shanghai, China.
Zhiyong LiMarine Biotechnology Laboratory, Department of Bioengineering, State Key Laboratory of Microbial Metabolism-School of Life Sciences and Biotechnology, Shanghai Jiao Tong University Shanghai, China.
Shanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

"Entotheonella" (phylum "Tectomicrobia") is a filamentous symbiont that produces almost all known bioactive compounds derived from the Lithistida sponge Theonella swinhoei. In contrast to the comprehensive knowledge of its secondary metabolism, knowledge of its lifestyle, resilience, and interaction with the sponge host and other symbionts remains rudimentary. In this study, we obtained two "Entotheonella" genomes from T. swinhoei from the South China Sea through metagenome binning, and used a RASTtk pipeline to achieve better genome annotation. The high average nucleotide index values suggested they were the same phylotypes as the two "Entotheonella" phylotypes from T. swinhoei from the Japan Sea. Genomic features related to utilization of various carbon sources, peptidase secretion, CO2 fixation, sulfate reduction, anaerobic respiration, and denitrification indicated the mixotrophic nature of "Entotheonella." The endospore-forming potential along with metal- and antibiotic resistance indicated "Entotheonella" was highly resilient to harsh conditions. The potential for endospore formation also explained the widespread distribution of "Entotheonella" to some extent. The discovery of Type II (general secretion pathway proteins and the Widespread Colonization Island) and Type VI secretion systems in "Entotheonella" suggested it could secrete extracellular hydrolases, form tight adhesion, act against phagocytes, and kill other prokaryotes. Overall, the newly discovered genomic features suggest "Entotheonella" is a highly competitive member of the symbiotic community of T. swinhoei.

Indexed as

“Entotheonella”interactionmetagenome binningmixotrophresiliencesponge symbiont

Identifiers

PMID27610106
PMCPMC4996862
OpenAlexW2512116674

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.